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Items: 1 to 20 of 22

1.
The metazoan ATAC and SAGA coactivator HAT complexes regulate different sets of inducible target genes
Zita Nagy, Anne Riss, Sally Fujiyama, Arnaud Krebs, Meritxell Orpinell, Pascal Jansen, Adrian Cohen, Henk G. Stunnenberg, Shigeaki Kato, Làszlò Tora
Cell Mol Life Sci. 2010 Feb; 67(4): 611–628. Published online 2009 Nov 21. doi: 10.1007/s00018-009-0199-8
PMCID:
PMC11115597
AbstractArticlePDF–816K
2.
Acetylation of Mammalian ADA3 Is Required for Its Functional Roles in Histone Acetylation and Cell Proliferation
Shakur Mohibi, Shashank Srivastava, Aditya Bele, Sameer Mirza, Hamid Band, Vimla Band
Mol Cell Biol. 2016 Oct 1; 36(19): 2487–2502. Prepublished online 2016 Jul 11. Published online 2016 Sep 12. doi: 10.1128/MCB.00342-16
PMCID:
PMC5021379
AbstractArticlePDF–3.3M
3.
Alteration/Deficiency in Activation 3 (ADA3) Protein, a Cell Cycle Regulator, Associates with the Centromere through CENP-B and Regulates Chromosome Segregation
Shakur Mohibi, Shashank Srivastava, Jun Wang-France, Sameer Mirza, Xiangshan Zhao, Hamid Band, Vimla Band
J Biol Chem. 2015 Nov 20; 290(47): 28299–28310. Published online 2015 Oct 1. doi: 10.1074/jbc.M115.685511
PMCID:
PMC4653685
AbstractArticlePDF–2.4M
4.
Alteration/deficiency in activation-3 (Ada3) plays a critical role in maintaining genomic stability
Sameer Mirza, Bryan J. Katafiasz, Rakesh Kumar, Jun Wang, Shakur Mohibi, Smrati Jain, Channabasavaiah Basavaraju Gurumurthy, Tej K. Pandita, Bhavana J. Dave, Hamid Band, Vimla Band
Cell Cycle. 2012 Nov 15; 11(22): 4266–4274. doi: 10.4161/cc.22613
PMCID:
PMC3524221
AbstractArticlePDF–1.4M
5.
Mammalian Alteration/Deficiency in Activation 3 (Ada3) Is Essential for Embryonic Development and Cell Cycle Progression
Shakur Mohibi, Channabasavaiah Basavaraju Gurumurthy, Alo Nag, Jun Wang, Sameer Mirza, Yousaf Mian, Meghan Quinn, Bryan Katafiasz, James Eudy, Sanjit Pandey, Chittibabu Guda, Mayumi Naramura, Hamid Band, Vimla Band
J Biol Chem. 2012 Aug 24; 287(35): 29442–29456. Published online 2012 Jun 26. doi: 10.1074/jbc.M112.378901
PMCID:
PMC3436190
AbstractArticlePDF–3.5M
6.
Functional Consequences of Necdin Nucleocytoplasmic Localization
Anat Lavi-Itzkovitz, Marianna Tcherpakov, Zehava Levy, Shalev Itzkovitz, Francoise Muscatelli, Mike Fainzilber
PLoS One. 2012; 7(3): e33786. Published online 2012 Mar 19. doi: 10.1371/journal.pone.0033786
PMCID:
PMC3307762
AbstractArticlePDF–780K
7.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
8.
A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58
Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara
Dev Cell. Author manuscript; available in PMC 2011 Jun 7.
Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011
PMCID:
PMC3110151
AbstractArticlePDF–2.0M
9.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
10.
The ATAC acetyl transferase complex controls mitotic progression by targeting non-histone substrates
Meritxell Orpinell, Marjorie Fournier, Anne Riss, Zita Nagy, Arnaud R Krebs, Mattia Frontini, Làszlò Tora
EMBO J. 2010 Jul 21; 29(14): 2381–2394. Published online 2010 Jun 18. doi: 10.1038/emboj.2010.125
PMCID:
PMC2910275
AbstractArticlePDF–1.5M
11.
ATAC and Mediator coactivators form a stable complex and regulate a set of non-coding RNA genes
Arnaud R Krebs, Jeroen Demmers, Krishanpal Karmodiya, Nan-Chi Chang, Alice Chien Chang, László Tora
EMBO Rep. 2010 Jul; 11(7): 541–547. Published online 2010 May 28. doi: 10.1038/embor.2010.75
PMCID:
PMC2897115
AbstractArticlePDF–433K
12.
The Human SPT20-Containing SAGA Complex Plays a Direct Role in the Regulation of Endoplasmic Reticulum Stress-Induced Genes
Zita Nagy, Anne Riss, Christophe Romier, Xavier le Guezennec, Ashok R. Dongre, Meritxell Orpinell, Jiahuai Han, Henk Stunnenberg, Làszlò Tora
Mol Cell Biol. 2009 Mar; 29(6): 1649–1660. Published online 2008 Dec 29. doi: 10.1128/MCB.01076-08
PMCID:
PMC2648226
AbstractArticlePDF–1.2M
13.
The Double-Histone-Acetyltransferase Complex ATAC Is Essential for Mammalian Development
Sebastián Guelman, Kenji Kozuka, Yifan Mao, Victoria Pham, Mark J. Solloway, John Wang, Jiansheng Wu, Jennie R. Lill, Jiping Zha
Mol Cell Biol. 2009 Mar; 29(5): 1176–1188. Published online 2008 Dec 22. doi: 10.1128/MCB.01599-08
PMCID:
PMC2643826
AbstractArticlePDF–4.1M
14.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
15.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
16.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
17.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
18.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K
19.
UV-damaged DNA-binding protein in the TFTC complex links DNA damage recognition to nucleosome acetylation
Marjorie Brand, Jonathan G. Moggs, Mustapha Oulad-Abdelghani, Fabrice Lejeune, F.Jeffrey Dilworth, James Stevenin, Geneviève Almouzni, Làszlò Tora
EMBO J. 2001 Jun 15; 20(12): 3187–3196. doi: 10.1093/emboj/20.12.3187
PMCID:
PMC150203
AbstractArticlePDF–316K
20.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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