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Items: 1 to 20 of 23

1.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
2.
MondoA drives muscle lipid accumulation and insulin resistance
Byungyong Ahn, Shibiao Wan, Natasha Jaiswal, Rick B. Vega, Donald E. Ayer, Paul M. Titchenell, Xianlin Han, Kyoung Jae Won, Daniel P. Kelly
JCI Insight. 2019 Aug 8; 4(15): e129119. Published online 2019 Aug 8. doi: 10.1172/jci.insight.129119
PMCID:
PMC6693825
AbstractArticlePDF–4.4M
3.
Phylogenetic and expression analysis of the basic helix-loop-helix transcription factor gene family: genomic approach to cellular differentiation
Jeffrey D. Stevens, Eric H. Roalson, Michael K. Skinner
Differentiation. Author manuscript; available in PMC 2017 Dec 13.
Published in final edited form as: Differentiation. 2008 Nov; 76(9): 1006–1022. Published online 2008 Jun 4. doi: 10.1111/j.1432-0436.2008.00285.x
PMCID:
PMC5728086
AbstractArticlePDF–2.4M
4.
MondoA coordinately regulates skeletal myocyte lipid homeostasis and insulin signaling
Byungyong Ahn, Mangala M. Soundarapandian, Hampton Sessions, Satyamaheshwar Peddibhotla, Gregory P. Roth, Jian-Liang Li, Eliot Sugarman, Ada Koo, Siobhan Malany, Miao Wang, Kyungmoo Yea, Jeanne Brooks, Teresa C. Leone, Xianlin Han, Rick B. Vega, Daniel P. Kelly
J Clin Invest. 2016 Sep 1; 126(9): 3567–3579. Published online 2016 Aug 8. doi: 10.1172/JCI87382
PMCID:
PMC5004938
AbstractArticlePDF–1.5M
5.
Contrasting Patterns in the Evolution of Vertebrate MLX Interacting Protein (MLXIP) and MLX Interacting Protein-Like (MLXIPL) Genes
Parmveer Singh, David M. Irwin
PLoS One. 2016; 11(2): e0149682. Published online 2016 Feb 24. doi: 10.1371/journal.pone.0149682
PMCID:
PMC4766361
AbstractArticlePDF–1.8M
6.
MondoA senses adenine nucleotides: transcriptional induction of thioredoxin-interacting protein
Kyoung-Sim Han, Donald E. Ayer
Biochem J. Author manuscript; available in PMC 2015 May 18.
Published in final edited form as: Biochem J. 2013 Jul 15; 453(2): 209–218. doi: 10.1042/BJ20121126
PMCID:
PMC4435952
AbstractArticlePDF–1.1M
7.
MondoA deficiency enhances sprint performance in mice
Minako Imamura, Benny Hung-Junn Chang, Motoyuki Kohjima, Ming Li, Byounghoon Hwang, Heinrich Taegtmeyer, Robert A. Harris, Lawrence Chan
Biochem J. Author manuscript; available in PMC 2015 Apr 27.
Published in final edited form as: Biochem J. 2014 Nov 15; 464(1): 35–48. doi: 10.1042/BJ20140530
PMCID:
PMC4410994
AbstractArticlePDF–2.1M
8.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
9.
MondoA-Mlx Transcriptional Activity Is Limited by mTOR-MondoA Interaction
Mohan R. Kaadige, Jingye Yang, Blake R. Wilde, Donald E. Ayer
Mol Cell Biol. 2015 Jan; 35(1): 101–110. Prepublished online 2014 Oct 20. Published online 2014 Dec 9. doi: 10.1128/MCB.00636-14
PMCID:
PMC4295369
AbstractArticlePDF–997K
10.
Thioredoxin-Interacting Protein Gene Expression via MondoA Is Rapidly and Transiently Suppressed during Inflammatory Responses
Yasuyoshi Kanari, Yuki Sato, Satoru Aoyama, Tatsushi Muta
PLoS One. 2013; 8(3): e59026. Published online 2013 Mar 8. doi: 10.1371/journal.pone.0059026
PMCID:
PMC3592832
AbstractArticlePDF–785K
11.
Glucose Induces Protein Targeting to Glycogen in Hepatocytes by Fructose 2,6-Bisphosphate-Mediated Recruitment of MondoA to the Promoter
John L. Petrie, Ziad H. Al-Oanzi, Catherine Arden, Susan J. Tudhope, Jelena Mann, Julius Kieswich, Muhammad M. Yaqoob, Howard C. Towle, Loranne Agius
Mol Cell Biol. 2013 Feb; 33(4): 725–738. doi: 10.1128/MCB.01576-12
PMCID:
PMC3571345
AbstractArticlePDF–2.7M
12.
MondoA Senses Non-glucose Sugars: REGULATION OF THIOREDOXIN-INTERACTING PROTEIN (TXNIP) AND THE HEXOSE TRANSPORT CURB
Carrie A. Stoltzman, Mohan R. Kaadige, Christopher W. Peterson, Donald E. Ayer
J Biol Chem. 2011 Nov 4; 286(44): 38027–38034. Published online 2011 Sep 9. doi: 10.1074/jbc.M111.275503
PMCID:
PMC3207397
AbstractArticlePDF–1.4M
13.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
14.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
15.
Lactic Acidosis Triggers Starvation Response with Paradoxical Induction of TXNIP through MondoA
Julia Ling-Yu Chen, Daniel Merl, Christopher W. Peterson, Jianli Wu, Patrick Yantyng Liu, Hanwei Yin, Deborah M. Muoio, Don E. Ayer, Mike West, Jen-Tsan Chi
PLoS Genet. 2010 Sep; 6(9): e1001093. Published online 2010 Sep 2. doi: 10.1371/journal.pgen.1001093
PMCID:
PMC2937306
AbstractArticlePDF–3.9M
16.
Glucose Controls Nuclear Accumulation, Promoter Binding, and Transcriptional Activity of the MondoA-Mlx Heterodimer
Christopher W. Peterson, Carrie A. Stoltzman, Michael P. Sighinolfi, Kyoung-Sim Han, Donald E. Ayer
Mol Cell Biol. 2010 Jun; 30(12): 2887–2895. Published online 2010 Apr 12. doi: 10.1128/MCB.01613-09
PMCID:
PMC2876681
AbstractArticlePDF–880K
17.
An atlas of combinatorial transcriptional regulation in mouse and man
The FANTOM consortium and RIKEN Omics Science Center
Cell. Author manuscript; available in PMC 2011 Mar 5.
Published in final edited form as: Cell. 2010 Mar 5; 140(5): 744–752. doi: 10.1016/j.cell.2010.01.044
Correction in:
volume 141 on page 369
PMCID:
PMC2836267
AbstractArticlePDF–2.2M
18.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
19.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
20.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K

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