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Items: 19

1.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
2.
A Survey of Essential Genome Stability Genes Reveals That Replication Stress Mitigation Is Critical for Peri-Implantation Embryogenesis
Georgia R. Kafer, Anthony J. Cesare
Front Cell Dev Biol. 2020; 8: 416. Published online 2020 May 29. doi: 10.3389/fcell.2020.00416
PMCID:
PMC7274024
AbstractArticlePDF–1.3M
3.
Modulation of morphogenesis by noncanonical Wnt signaling requires ATF/CREB family–mediated transcriptional activation of TGFß2
Wenlai Zhou, Lizhu Lin, Arindam Majumdar, Xue Li, Xiaoxue Zhang, Wei Liu, Leah Etheridge, Yunqing Shi, James Martin, Wim Van de Ven, Vesa Kaartinen, Anthony Wynshaw-Boris, Andrew P McMahon, Michael G Rosenfeld, Sylvia M Evans
Nat Genet. Author manuscript; available in PMC 2017 Aug 31.
Published in final edited form as: Nat Genet. 2007 Oct; 39(10): 1225–1234. Published online 2007 Sep 2. doi: 10.1038/ng2112
PMCID:
PMC5578467
AbstractArticlePDF–1.9M
4.
Maternal expression and early induction of histone gene transcription factor Hinfp sustains development in pre-implantation embryos
Prachi N. Ghule, Rong-Lin Xie, Jennifer L. Colby, Jaime A. Rivera-Pérez, Stephen N. Jones, Jane B. Lian, Janet L. Stein, Andre J. van Wijnen, Gary S. Stein
Dev Biol. Author manuscript; available in PMC 2017 Nov 15.
Published in final edited form as: Dev Biol. 2016 Nov 15; 419(2): 311–320. Published online 2016 Sep 5. doi: 10.1016/j.ydbio.2016.09.003
PMCID:
PMC5125829
AbstractArticlePDF–1.1M
5.
p53 checkpoint ablation exacerbates the phenotype of Hinfp dependent histone H4 deficiency
Prachi N Ghule, Rong-Lin Xie, Jennifer L Colby, Stephen N Jones, Jane B Lian, Andre J van Wijnen, Janet L Stein, Gary S Stein
Cell Cycle. 2015 Aug 3; 14(15): 2501–2508. Published online 2015 Jun 1. doi: 10.1080/15384101.2015.1049783
PMCID:
PMC4612103
AbstractArticlePDF–720K
6.
Fidelity of Histone Gene Regulation Is Obligatory for Genome Replication and Stability
Prachi N. Ghule, Rong-Lin Xie, Ricardo Medina, Jennifer L. Colby, Stephen N. Jones, Jane B. Lian, Janet L. Stein, Andre J. van Wijnen, Gary S. Stein
Mol Cell Biol. 2014 Jul; 34(14): 2650–2659. doi: 10.1128/MCB.01567-13
PMCID:
PMC4097655
AbstractArticlePDF–1.7M
7.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
8.
Functional coupling of transcription factor HiNF-P and histone H4 gene expression during pre- and post-natal mouse development
Li-Jun Liu, Ronglin Xie, Sadiq Hussain, Jane B. Lian, Jaime Rivera-Perez, Stephen N. Jones, Janet L. Stein, Gary S. Stein, Andre J. van Wijnen
Gene. Author manuscript; available in PMC 2012 Sep 1.
Published in final edited form as: Gene. 2011 Sep 1; 483(1-2): 1–10. Published online 2011 May 13. doi: 10.1016/j.gene.2011.05.002
PMCID:
PMC3164518
AbstractArticlePDF–565K
9.
A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58
Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara
Dev Cell. Author manuscript; available in PMC 2011 Jun 7.
Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011
PMCID:
PMC3110151
AbstractArticlePDF–2.0M
10.
The histone gene activator HINFP is a nonredundant cyclin E/CDK2 effector during early embryonic cell cycles
Ronglin Xie, Ricardo Medina, Ying Zhang, Sadiq Hussain, Jennifer Colby, Prachi Ghule, Sakthi Sundararajan, Marilyn Keeler, Li-Jun Liu, Margaretha van der Deen, Partha Mitra, Jane B. Lian, Jaime A. Rivera-Perez, Stephen N. Jones, Janet L. Stein, Andre J. van Wijnen, Gary S. Stein
Proc Natl Acad Sci U S A. 2009 Jul 28; 106(30): 12359–12364. Published online 2009 Jul 9. doi: 10.1073/pnas.0905651106
PMCID:
PMC2718389
AbstractArticlePDF–1.3M
11.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
12.
Transcriptional activation of the histone nuclear factor P (HiNF-P) gene by HiNF-P and its Cyclin E/CDK2 responsive co-factor p220NPAT defines a novel autoregulatory loop at the G1/S phase transition
Rong-Lin Xie, Lijun Liu, Partha Mitra, Janet L. Stein, Andre J. van Wijnen, Gary S. Stein
Gene. Author manuscript; available in PMC 2008 May 1.
Published in final edited form as: Gene. 2007 Nov 1; 402(1-2): 94–102. Published online 2007 Aug 9. doi: 10.1016/j.gene.2007.07.027
PMCID:
PMC2063457
AbstractArticlePDF–567K
13.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
14.
Sequence-specific transcriptional repression by an MBD2-interacting zinc finger protein MIZF
Masayuki Sekimata, Yoshimi Homma
Nucleic Acids Res. 2004; 32(2): 590–597. Published online 2004 Jan 29. doi: 10.1093/nar/gkh249
PMCID:
PMC373363
AbstractArticlePDF–284K
15.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
16.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
17.
Transcriptome Analysis of Mouse Stem Cells and Early Embryos
Alexei A Sharov, Yulan Piao, Ryo Matoba, Dawood B Dudekula, Yong Qian, Vincent VanBuren, Geppino Falco, Patrick R Martin, Carole A Stagg, Uwem C Bassey, Yuxia Wang, Mark G Carter, Toshio Hamatani, Kazuhiro Aiba, Hidenori Akutsu, Lioudmila Sharova, Tetsuya S Tanaka, Wendy L Kimber, Toshiyuki Yoshikawa, Saied A Jaradat, Serafino Pantano, Ramaiah Nagaraja, Kenneth R Boheler, Dennis Taub, Richard J Hodes, Dan L Longo, David Schlessinger, Jonathan Keller, Emily Klotz, Garnett Kelsoe, Akihiro Umezawa, Angelo L Vescovi, Janet Rossant, Tilo Kunath, Brigid L. M Hogan, Anna Curci, Michele D'Urso, Janet Kelso, Winston Hide, Minoru S. H Ko
PLoS Biol. 2003 Dec; 1(3): e74. Published online 2003 Dec 22. doi: 10.1371/journal.pbio.0000074
PMCID:
PMC300684
AbstractArticlePDF–572K
18.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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