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Select item 114465481.

The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay

Moran Kelbert, Antonio Jordán-Pla, Lola de Miguel-Jiménez, José García-Martínez, Michael Selitrennik, Adi Guterman, Noa Henig, Sander Granneman, José E Pérez-Ortín, Sebastián Chávez, Mordechai Choder

eLife. 2024; 12: RP90766. Published online 2024 Oct 2. doi: 10.7554/eLife.90766

PMCID:: PMC11446548

Abstract Article PDF–7.1M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 100858064.

Functional tug of war between kinases, phosphatases, and the Gcn5 acetyltransferase in chromatin and cell cycle checkpoint controls

Qihao Liu, Lorraine Pillus, Emily L Petty

G3 (Bethesda) 2023 Apr; 13(4): jkad021. Published online 2023 Feb 6. doi: 10.1093/g3journal/jkad021

PMCID:: PMC10085806

Abstract Article PDF–1003K

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 81938386.

A predictive model of gene expression reveals the role of regulatory motifs in the mating response of yeast

Amy E. Pomeroy, Matthew I. Pena, John R. Houser, Gauri Dixit, Henrik G. Dohlman, Timothy C. Elston, Beverly Errede

Sci Signal. Author manuscript; available in PMC 2021 Jun 11.

Published in final edited form as: Sci Signal. 2021 Feb 16; 14(670): eabb5235. Published online 2021 Feb 16. doi: 10.1126/scisignal.abb5235

PMCID:: PMC8193838

Abstract Article PDF–2.2M

Select item 67794367.

Systematic analysis of F-box proteins reveals a new branch of the yeast mating pathway

Nambirajan Rangarajan, Claire L. Gordy, Lauren Askew, Samantha M. Bevill, Timothy C. Elston, Beverly Errede, Jillian H. Hurst, Joshua B. Kelley, Joshua B. Sheetz, Sara Kimiko Suzuki, Natalie H. Valentin, Everett Young, Henrik G. Dohlman

J Biol Chem. 2019 Oct 4; 294(40): 14717–14731. Published online 2019 Aug 9. doi: 10.1074/jbc.RA119.010063

PMCID:: PMC6779436

Abstract Article PDF–1.5M

Select item 66622078.

Evolution and Engineering of Allosteric Regulation in Protein Kinases

David Pincus, Jai P. Pandey, Zoë A. Feder, Pau Creixell, Orna Resnekov, Kimberly A. Reynolds

Sci Signal. Author manuscript; available in PMC 2019 Jul 29.

Published in final edited form as: Sci Signal. 2018 Nov 6; 11(555): eaar3250. Published online 2018 Nov 6. doi: 10.1126/scisignal.aar3250

PMCID:: PMC6662207

Abstract Article PDF–2.8M

Select item 60349029.

Inositol polyphosphates regulate and predict yeast pseudohyphal growth phenotypes

Kaitlyn L. Norman, Christian A. Shively, Amberlene J. De La Rocha, Nebibe Mutlu, Sukanya Basu, Paul J. Cullen, Anuj Kumar

PLoS Genet. 2018 Jun; 14(6): e1007493. Published online 2018 Jun 25. doi: 10.1371/journal.pgen.1007493

PMCID:: PMC6034902

Abstract Article PDF–5.4M

Select item 600458110.

Analysis of the thresholds for transcriptional activation by the yeast MAP kinases Fus3 and Kss1

Matthew J. Winters, Peter M. Pryciak

Mol Biol Cell. 2018 Mar 1; 29(5): 669–682. doi: 10.1091/mbc.E17-10-0578

PMCID:: PMC6004581

Abstract Article PDF–2.5M

Select item 598777911.

Negative Feedback Phosphorylation of G? Subunit Ste18 and the Ste5 Scaffold Synergistically Regulates MAPK Activation in Yeast

Shilpa Choudhury, Parastoo Baradaran-Mashinchi, Matthew P. Torres

Cell Rep. Author manuscript; available in PMC 2018 Jun 5.

Published in final edited form as: Cell Rep. 2018 May 1; 23(5): 1504–1515. doi: 10.1016/j.celrep.2018.03.135

PMCID:: PMC5987779

Abstract Article PDF–1.7M

Select item 588467912.

Single‐cell profiling screen identifies microtubule‐dependent reduction of variability in signaling

C Gustavo Pesce, Stefan Zdraljevic, William J Peria, Alan Bush, María Victoria Repetto, Daniel Rockwell, Richard C Yu, Alejandro Colman‐Lerner, Roger Brent

Mol Syst Biol. 2018 Apr; 14(4): e7390. Published online 2018 Apr 4. doi: 10.15252/msb.20167390

PMCID:: PMC5884679

Abstract Article PDF–2.3M

Select item 576535913.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 576439414.

Mitogen-activated protein kinases, Fus3 and Kss1, regulate chronological lifespan in yeast

Maneesha Aluru, Tori McKinney, Anne-Kathryn L. Venero, Shilpa Choudhury, Matthew Torres

Aging (Albany NY) 2017 Dec; 9(12): 2587–2609. Published online 2017 Dec 21. doi: 10.18632/aging.101350

PMCID:: PMC5764394

Abstract Article PDF–4.8M

Select item 575477415.

SCWISh network is essential for survival under mechanical pressure

Morgan Delarue, Gregory Poterewicz, Ori Hoxha, Jessica Choi, Wonjung Yoo, Jona Kayser, Liam Holt, Oskar Hallatschek

Proc Natl Acad Sci U S A. 2017 Dec 19; 114(51): 13465–13470. Published online 2017 Nov 29. doi: 10.1073/pnas.1711204114

PMCID:: PMC5754774

Abstract Article PDF–1.1M

Select item 566188516.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025417.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823