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Items: 18

1.
Y chromosomal noncoding RNAs regulate autosomal gene expression via piRNAs in mouse testis
Hemakumar M. Reddy, Rupa Bhattacharya, Shrish Tiwari, Kankadeb Mishra, Pranatharthi Annapurna, Zeenath Jehan, Nissankararao Mary Praveena, Jomini Liza Alex, Vishnu M. Dhople, Lalji Singh, Mahadevan Sivaramakrishnan, Anurag Chaturvedi, Nandini Rangaraj, Thomas Michael Shiju, Badanapuram Sreedevi, Sachin Kumar, Ram Reddy Dereddi, Sunayana M. Rayabandla, Rachel A. Jesudasan
BMC Biol. 2021; 19: 198. Published online 2021 Sep 9. doi: 10.1186/s12915-021-01125-x
PMCID:
PMC8428117
AbstractArticlePDF–5.7M
2.
Battle of the Sex Chromosomes: Competition between X and Y Chromosome-Encoded Proteins for Partner Interaction and Chromatin Occupancy Drives Multicopy Gene Expression and Evolution in Muroid Rodents
Charlotte Moretti, Mélina Blanco, Côme Ialy-Radio, Maria-Elisabetta Serrentino, Clara Gobé, Robin Friedman, Christophe Battail, Marjorie Leduc, Monika A Ward, Daniel Vaiman, Frederic Tores, Julie Cocquet
Mol Biol Evol. 2020 Dec; 37(12): 3453–3468. Published online 2020 Jul 13. doi: 10.1093/molbev/msaa175
PMCID:
PMC7743899
AbstractArticlePDF–1.4M
3.
Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling
Karam Aboudehen, Shayan Farahani, Mohammed Kanchwala, Siu Chiu Chan, Svetlana Avdulov, Alan Mickelson, Dayeon Lee, Micah D. Gearhart, Vishal Patel, Chao Xing, Peter Igarashi
J Biol Chem. 2018 Jun 15; 293(24): 9388–9398. Published online 2018 May 1. doi: 10.1074/jbc.RA118.001723
PMCID:
PMC6005429
AbstractArticlePDF–2.2M
4.
SLY regulates genes involved in chromatin remodeling and interacts with TBL1XR1 during sperm differentiation
Charlotte Moretti, Maria-Elisabetta Serrentino, Côme Ialy-Radio, Marion Delessard, Tatiana A Soboleva, Frederic Tores, Marjorie Leduc, Patrick Nitschké, Joel R Drevet, David J Tremethick, Daniel Vaiman, Ayhan Kocer, Julie Cocquet
Cell Death Differ. 2017 Jun; 24(6): 1029–1044. Published online 2017 May 5. doi: 10.1038/cdd.2017.32
PMCID:
PMC5442469
AbstractArticlePDF–3.1M
5.
The Vertebrate Genome Annotation browser 10 years on
Jennifer L. Harrow, Charles A. Steward, Adam Frankish, James G. Gilbert, Jose M. Gonzalez, Jane E. Loveland, Jonathan Mudge, Dan Sheppard, Mark Thomas, Stephen Trevanion, Laurens G. Wilming
Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D771–D779. Published online 2013 Dec 6. doi: 10.1093/nar/gkt1241
PMCID:
PMC3964964
AbstractArticlePDF–11M
6.
SSTY proteins colocalize with the postmeiotic sex chromatin and interact with regulators of its expression
Aurélie Comptour, Charlotte Moretti, Maria-Elisabetta Serrentino, Jana Auer, Côme Ialy-Radio, Monika A. Ward, Aminata Touré, Daniel Vaiman, Julie Cocquet
FEBS J. Author manuscript; available in PMC 2015 Mar 1.
Published in final edited form as: FEBS J. 2014 Mar; 281(6): 1571–1584. Published online 2014 Feb 13. doi: 10.1111/febs.12724
PMCID:
PMC3960347
AbstractArticlePDF–2.8M
7.
The role of Dby mRNA in early development of male mouse zygotes
Chen-Jiang Yao, Wang-Jie Xu, Xiu-Li Gong, Ying Zhou, Zhi-Qiang Yan, Zi-Jue Zhu, Zhao-Xia Wang, Qiao-Li Li, Xin-Bin Guo, Lian-Yun Wang, Duan Ma, Zhong-Dong Qiao
Asian J Androl. 2010 Jul; 12(4): 567–577. Published online 2010 Jun 14. doi: 10.1038/aja.2010.28
PMCID:
PMC3739365
AbstractArticlePDF–737K
8.
Deficiency of the multi-copy mouse Y gene Sly causes sperm DNA damage and abnormal chromatin packaging
Jonathan M. Riel, Yasuhiro Yamauchi, Atsushi Sugawara, Ho Yan J. Li, Victor Ruthig, Zoia Stoytcheva, Peter J. I. Ellis, Julie Cocquet, Monika A. Ward
J Cell Sci. 2013 Feb 1; 126(3): 803–813. doi: 10.1242/jcs.114488
PMCID:
PMC3619810
AbstractArticle
9.
A Genetic Basis for a Postmeiotic X Versus Y Chromosome Intragenomic Conflict in the Mouse
Julie Cocquet, Peter J. I. Ellis, Shantha K. Mahadevaiah, Nabeel A. Affara, Daniel Vaiman, Paul S. Burgoyne
PLoS Genet. 2012 Sep; 8(9): e1002900. Published online 2012 Sep 13. doi: 10.1371/journal.pgen.1002900
Correction in:
PLoS Genet. 2019 Jul; 15(7): e1008290.
PMCID:
PMC3441658
AbstractArticlePDF–1.8M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
12.
The Multi-Copy Mouse Gene Sycp3-Like Y-Linked (Sly) Encodes an Abundant Spermatid Protein That Interacts with a Histone Acetyltransferase and an Acrosomal Protein
Louise N. Reynard, Julie Cocquet, Paul S. Burgoyne
Biol Reprod. 2009 Aug; 81(2): 250–257. Published online 2009 Jan 28. doi: 10.1095/biolreprod.108.075382
PMCID:
PMC2849823
AbstractArticlePDF–3.4M
13.
Live Offspring from Mice Lacking the Y Chromosome Long Arm Gene Complement
Yasuhiro Yamauchi, Jonathan M. Riel, Samantha J. Wong, Obah A. Ojarikre, Paul S. Burgoyne, Monika A. Ward
Biol Reprod. 2009 Aug; 81(2): 353–361. Published online 2009 May 6. doi: 10.1095/biolreprod.109.076307
PMCID:
PMC2849819
AbstractArticlePDF–2.9M
14.
The Multicopy Gene Sly Represses the Sex Chromosomes in the Male Mouse Germline after Meiosis
Julie Cocquet, Peter J. I. Ellis, Yasuhiro Yamauchi, Shantha K. Mahadevaiah, Nabeel A. Affara, Monika A. Ward, Paul S. Burgoyne
PLoS Biol. 2009 Nov; 7(11): e1000244. Published online 2009 Nov 17. doi: 10.1371/journal.pbio.1000244
PMCID:
PMC2770110
AbstractArticlePDF–3.8M
15.
Identification of novel Y chromosome encoded transcripts by testis transcriptome analysis of mice with deletions of the Y chromosome long arm
Aminata Touré, Emily J Clemente, Peter Ellis, Shantha K Mahadevaiah, Obah A Ojarikre, Penny AF Ball, Louise Reynard, Kate L Loveland, Paul S Burgoyne, Nabeel A Affara
Genome Biol. 2005; 6(12): R102. Published online 2005 Dec 2. doi: 10.1186/gb-2005-6-12-r102
Correction in:
Genome Biol. 2019; 20: 160.
PMCID:
PMC1414076
AbstractArticlePDF–4.3M
16.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
17.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
18.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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