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Select item 107611211.

CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing

Doreen I. Lugano, Lindsey N. Barrett, Dale Chaput, Margaret A. Park, Sandy D. Westerheide

RNA Biol. 2024; 21(1): 1–11. Published online 2023 Dec 21. doi: 10.1080/15476286.2023.2289707

PMCID:: PMC10761121

Abstract Article PDF–2.5M

Select item 106561002.

The E3/E4 ubiquitin ligase UFD-2 suppresses normal and oncogenic signaling mediated by a Raf ortholog in Caenorhabditis elegans

Robert Townley, Augustin Deniaud, Kennedy S. Stacy, Claudia S. Rodriguez Torres, Fatemeh Cheraghi, Nicole B. Wicker, Claire C. de la Cova

Sci Signal. Author manuscript; available in PMC 2023 Nov 17.

Published in final edited form as: Sci Signal. 2023 Aug 29; 16(800): eabq4355. Published online 2023 Aug 29. doi: 10.1126/scisignal.abq4355

PMCID:: PMC10656100

Abstract Article PDF–1.1M

Select item 106176263.

SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans

Valerie J. Robert, Matthieu Caron, Loic Gely, Annie Adrait, Victoria Pakulska, Yohann Couté, Manon Chevalier, Christian G. Riedel, Cecile Bedet, Francesca Palladino

Development. 2023 Nov 1; 150(21): dev201755. Published online 2023 Oct 17. doi: 10.1242/dev.201755

PMCID:: PMC10617626

Abstract Article

Select item 90207164.

A modified TurboID approach identifies tissue-specific centriolar components in C. elegans

Elisabeth Holzer, Cornelia Rumpf-Kienzl, Sebastian Falk, Alexander Dammermann

PLoS Genet. 2022 Apr; 18(4): e1010150. Published online 2022 Apr 20. doi: 10.1371/journal.pgen.1010150

Correction in:: PLoS Genet. 2023 Feb; 19(2): e1010645.

PMCID:: PMC9020716

Abstract Article PDF–2.0M

Select item 89868345.

Melatonin reduces the endoplasmic reticulum stress and polyubiquitinated protein accumulation induced by repeated anesthesia exposure in Caenorhabditis elegans

Hyun-Jung Shin, Bon-Wook Koo, Jiwon Yoon, Heeyeon Kim, Sang-Hwan Do, Hyo-Seok Na

Sci Rep. 2022; 12: 5783. Published online 2022 Apr 6. doi: 10.1038/s41598-022-09853-y

PMCID:: PMC8986834

Abstract Article PDF–2.5M

Select item 85275656.

USP7 and VCP^FAF1 define the SUMO/Ubiquitin landscape at the DNA replication fork

André Franz, Pablo Valledor, Patricia Ubieto-Capella, Domenic Pilger, Antonio Galarreta, Vanesa Lafarga, Alejandro Fernández-Llorente, Guillermo de la Vega-Barranco, Fabian den Brave, Thorsten Hoppe, Oscar Fernandez-Capetillo, Emilio Lecona

Cell Rep. 2021 Oct 12; 37(2): 109819. Published online 2021 Oct 12. doi: 10.1016/j.celrep.2021.109819

PMCID:: PMC8527565

Abstract Article

Select item 83311837.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951768.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 79017699.

The conserved transmembrane protein TMEM-39 coordinates with COPII to promote collagen secretion and regulate ER stress response

Zhe Zhang, Shuo Luo, Guilherme Oliveira Barbosa, Meirong Bai, Thomas B. Kornberg, Dengke K. Ma

PLoS Genet. 2021 Feb; 17(2): e1009317. Published online 2021 Feb 1. doi: 10.1371/journal.pgen.1009317

PMCID:: PMC7901769

Abstract Article PDF–2.6M

Select item 729940710.

BK channel density is regulated by endoplasmic reticulum associated degradation and influenced by the SKN-1A/NRF1 transcription factor

Timothy P. Cheung, Jun-Yong Choe, Janet E. Richmond, Hongkyun Kim

PLoS Genet. 2020 Jun; 16(6): e1008829. Published online 2020 Jun 5. doi: 10.1371/journal.pgen.1008829

PMCID:: PMC7299407

Abstract Article PDF–3.7M

Select item 697471511.

The Machado–Joseph disease deubiquitylase ataxin‐3 interacts with LC3C/GABARAP and promotes autophagy

Laura K. Herzog, Éva Kevei, Ricardo Marchante, Claudia Böttcher, Christian Bindesbøll, Alf Håkon Lystad, Annika Pfeiffer, Maria E. Gierisch, Florian A. Salomons, Anne Simonsen, Thorsten Hoppe, Nico P. Dantuma

Aging Cell. 2020 Jan; 19(1): e13051. Published online 2019 Oct 17. doi: 10.1111/acel.13051

PMCID:: PMC6974715

Abstract Article PDF–3.1M

Select item 682614512.

The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans

Stefanie Müthel, Bora Uyar, Mei He, Anne Krause, Burcu Vitrinel, Selman Bulut, Djordje Vasiljevic, Iris Marchal, Stefan Kempa, Altuna Akalin, Baris Tursun

Aging Cell. 2019 Dec; 18(6): e13012. Published online 2019 Aug 9. doi: 10.1111/acel.13012

PMCID:: PMC6826145

Abstract Article PDF–3.0M

Select item 632589413.

iProteinDB: An Integrative Database of Drosophila Post-translational Modifications

Yanhui Hu, Richelle Sopko, Verena Chung, Marianna Foos, Romain A. Studer, Sean D. Landry, Daniel Liu, Leonard Rabinow, Florian Gnad, Pedro Beltrao, Norbert Perrimon

G3 (Bethesda) 2019 Jan; 9(1): 1–11. Published online 2018 Nov 5. doi: 10.1534/g3.118.200637

PMCID:: PMC6325894

Abstract Article PDF–2.6M

Select item 621659014.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 606184915.

Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant

Jonas Defoort, Yves Van de Peer, Vanessa Vermeirssen

Nucleic Acids Res. 2018 Jul 27; 46(13): 6480–6503. Published online 2018 Jun 5. doi: 10.1093/nar/gky468

PMCID:: PMC6061849

Abstract Article PDF–6.6M

Select item 549447416.

Molecular definitions of autophagy and related processes

Lorenzo Galluzzi, Eric H Baehrecke, Andrea Ballabio, Patricia Boya, José Manuel Bravo‐San Pedro, Francesco Cecconi, Augustine M Choi, Charleen T Chu, Patrice Codogno, Maria Isabel Colombo, Ana Maria Cuervo, Jayanta Debnath, Vojo Deretic, Ivan Dikic, Eeva‐Liisa Eskelinen, Gian Maria Fimia, Simone Fulda, David A Gewirtz, Douglas R Green, Malene Hansen, J Wade Harper, Marja Jäättelä, Terje Johansen, Gabor Juhasz, Alec C Kimmelman, Claudine Kraft, Nicholas T Ktistakis, Sharad Kumar, Beth Levine, Carlos Lopez‐Otin, Frank Madeo, Sascha Martens, Jennifer Martinez, Alicia Melendez, Noboru Mizushima, Christian Münz, Leon O Murphy, Josef M Penninger, Mauro Piacentini, Fulvio Reggiori, David C Rubinsztein, Kevin M Ryan, Laura Santambrogio, Luca Scorrano, Anna Katharina Simon, Hans‐Uwe Simon, Anne Simonsen, Nektarios Tavernarakis, Sharon A Tooze, Tamotsu Yoshimori, Junying Yuan, Zhenyu Yue, Qing Zhong, Guido Kroemer

EMBO J. 2017 Jul 3; 36(13): 1811–1836. Published online 2017 Jun 8. doi: 10.15252/embj.201796697