PMC Links for GEO Profiles (Select 111547546) - PMC

Select item 109424671.

Mitochondrial Raf1 Regulates Glutamine Catabolism

Ronald L. Shanderson, Ian D. Ferguson, Zurab Siprashvili, Luca Ducoli, Albert M. Li, Weili Miao, Suhas Srinivasan, Mary Grace Velasco, Yang Li, Jiangbin Ye, Paul A. Khavari

Version 1. bioRxiv. Preprint. 2024 Mar 9. doi: 10.1101/2024.03.08.581297

PMCID:: PMC10942467

Abstract Article PDF–6.5M

Select item 97725582.

HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation

Jingsheng Yuan, Tao Lv, Jian Yang, Zhenru Wu, Lvnan Yan, Jiayin Yang, Yujun Shi, Li Jiang

Cell Mol Gastroenterol Hepatol. 2023; 15(2): 307–325. Published online 2022 Oct 14. doi: 10.1016/j.jcmgh.2022.10.005

PMCID:: PMC9772558

Abstract Article PDF–8.2M

Select item 96266883.

Ovarian tumorB1-mediated heat shock transcription factor 1 deubiquitination is critical for glycolysis and development of endometriosis

Xi Ling, Jiayi Lu, Xiaoyun Wang, Lan Liu, Lu Liu, Yadi Wang, Yujun Sun, Chune Ren, Chao Lu, Zhenhai Yu

iScience. 2022 Nov 18; 25(11): 105363. Published online 2022 Oct 14. doi: 10.1016/j.isci.2022.105363

PMCID:: PMC9626688

Abstract Article PDF–6.0M

Select item 81650304.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 79491095.

Trans-2-enoyl-CoA reductase limits Ca²⁺ accumulation in the endoplasmic reticulum by inhibiting the Ca²⁺ pump SERCA2b

Yasunori Uchida, Yasunori Yamamoto, Toshiaki Sakisaka

J Biol Chem. 2021 Jan-Jun; 296: 100310. Published online 2021 Jan 19. doi: 10.1016/j.jbc.2021.100310

PMCID:: PMC7949109

Abstract Article PDF–2.8M

Select item 58962026.

Discovery and Characterization of ZUFSP/ZUP1, a Distinct Deubiquitinase Class Important for Genome Stability

Dominika Kwasna, Syed Arif Abdul Rehman, Jayaprakash Natarajan, Stephen Matthews, Ross Madden, Virginia De Cesare, Simone Weidlich, Satpal Virdee, Ivan Ahel, Ian Gibbs-Seymour, Yogesh Kulathu

Mol Cell. 2018 Apr 5; 70(1): 150–164.e6. doi: 10.1016/j.molcel.2018.02.023

PMCID:: PMC5896202

Abstract Article

Select item 58648327.

An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations

Xiaonan Liu, Kari Salokas, Fitsum Tamene, Yaming Jiu, Rigbe G. Weldatsadik, Tiina Öhman, Markku Varjosalo

Nat Commun. 2018; 9: 1188. Published online 2018 Mar 22. doi: 10.1038/s41467-018-03523-2

PMCID:: PMC5864832

Abstract Article PDF–4.5M

Select item 55841568.

TRIM37, a novel E3 ligase for PEX5-mediated peroxisomal matrix protein import

Wei Wang, Zhi-Jie Xia, Jean-Claude Farré, Suresh Subramani

J Cell Biol. 2017 Sep 4; 216(9): 2843–2858. doi: 10.1083/jcb.201611170

PMCID:: PMC5584156

Abstract Article PDF–2.7M

Select item 55316119.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 461721110.

The BioPlex Network: A Systematic Exploration of the Human Interactome

Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2016 Jul 16.

Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043

PMCID:: PMC4617211

Abstract Article PDF–2.2M

Select item 422924611.

Genome-wide association study of alcohol dependence

Jens Treutlein, Sven Cichon, Monika Ridinger, Norbert Wodarz, Michael Soyka, Peter Zill, Wolfgang Maier, Rainald Moessner, Wolfgang Gaebel, Norbert Dahmen, Christoph Fehr, Norbert Scherbaum, Michael Steffens, Kerstin U. Ludwig, Josef Frank, H.- Erich Wichmann, Stefan Schreiber, Nico Dragano, Wolfgang Sommer, Fernando Leonardi-Essmann, Anbarasu Lourdusamy, Peter Gebicke-Haerter, Thomas F. Wienker, Patrick F. Sullivan, Markus M. Nöthen, Falk Kiefer, Rainer Spanagel, Karl Mann, Marcella Rietschel

Arch Gen Psychiatry. Author manuscript; available in PMC 2014 Nov 12.

Published in final edited form as: Arch Gen Psychiatry. 2009 Jul; 66(7): 773–784. doi: 10.1001/archgenpsychiatry.2009.83

PMCID:: PMC4229246

Abstract Article PDF–970K

Select item 343651412.

Studies of Human 2,4-Dienoyl CoA Reductase Shed New Light on Peroxisomal β-Oxidation of Unsaturated Fatty Acids

Tian Hua, Dong Wu, Wei Ding, Jiangyun Wang, Neil Shaw, Zhi-Jie Liu

J Biol Chem. 2012 Aug 17; 287(34): 28956–28965. Published online 2012 Jun 28. doi: 10.1074/jbc.M112.385351

PMCID:: PMC3436514

Abstract Article PDF–2.7M

Select item 324799913.

Two Proteases, Trypsin Domain-containing 1 (Tysnd1) and Peroxisomal Lon Protease (PsLon), Cooperatively Regulate Fatty Acid β-Oxidation in Peroxisomal Matrix

Kanji Okumoto, Yukari Kametani, Yukio Fujiki

J Biol Chem. 2011 Dec 30; 286(52): 44367–44379. Published online 2011 Oct 14. doi: 10.1074/jbc.M111.285197

PMCID:: PMC3247999

Abstract Article PDF–3.0M

Select item 317805914.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 293723415.

Multistudy Fine Mapping of Chromosome 2q Identifies XRCC5 as a Chronic Obstructive Pulmonary Disease Susceptibility Gene

Craig P. Hersh, Sreekumar G. Pillai, Guohua Zhu, David A. Lomas, Per Bakke, Amund Gulsvik, Dawn L. DeMeo, Barbara J. Klanderman, Ross Lazarus, Augusto A. Litonjua, David Sparrow, John J. Reilly, Alvar Agusti, Peter M. A. Calverley, Claudio F. Donner, Robert D. Levy, Barry J. Make, Peter D. Paré, Stephen I. Rennard, Jørgen Vestbo, Emiel F. M. Wouters, Mary Beth Scholand, Hilary Coon, John Hoidal, Edwin K. Silverman

Am J Respir Crit Care Med. 2010 Sep 1; 182(5): 605–613. Published online 2010 May 12. doi: 10.1164/rccm.200910-1586OC

PMCID:: PMC2937234

Abstract Article PDF–361K

Select item 289674416.

The SDR (Short-Chain Dehydrogenase/Reductase and Related Enzymes) Nomenclature Initiative

Bengt Persson, James E. Bray, Elspeth Bruford, Stephen L. Dellaporta, Angelo D. Favia, Roser Gonzalez Duarte, Hans Jörnvall, Yvonne Kallberg, Kathryn L. Kavanagh, Natalia Kedishvili, Michael Kisiela, Edmund Maser, Rebekka Mindnich, Sandra Orchard, Trevor M. Penning, Janet M. Thornton, Jerzy Adamski, Udo Oppermann

Chem Biol Interact. Author manuscript; available in PMC 2010 Jul 5.

Published in final edited form as: Chem Biol Interact. 2009 Mar 16; 178(1-3): 94–98. Published online 2008 Nov 5. doi: 10.1016/j.cbi.2008.10.040