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Items: 1 to 20 of 24

1.
Immune gene variation associated with chromosome-scale differences among individual zebrafish genomes
Sean C. McConnell, Kyle M. Hernandez, Jorge Andrade, Jill L. O. de Jong
Sci Rep. 2023; 13: 7777. Published online 2023 May 13. doi: 10.1038/s41598-023-34467-3
PMCID:
PMC10183018
AbstractArticlePDF–21M
2.
A zebrafish HCT116 xenograft model to predict anandamide outcomes on colorectal cancer
Francesca Maradonna, Camilla M. Fontana, Fiorenza Sella, Christian Giommi, Nicola Facchinello, Chiara Rampazzo, Micol Caichiolo, Seyed Hossein Hoseinifar, Luisa Dalla Valle, Hien Van Doan, Oliana Carnevali
Cell Death Dis. 2022 Dec; 13(12): 1069. Published online 2022 Dec 23. doi: 10.1038/s41419-022-05523-z
PMCID:
PMC9789132
AbstractArticlePDF–2.4M
3.
The Ahr2-Dependent wfikkn1 Gene Influences Zebrafish Transcriptome, Proteome, and Behavior
Prarthana Shankar, Gloria R Garcia, Jane K La Du, Christopher M Sullivan, Cheryl L Dunham, Britton C Goodale, Katrina M Waters, Stanislau Stanisheuski, Claudia S Maier, Preethi Thunga, David M Reif, Robyn L Tanguay
Toxicol Sci. 2022 Jun; 187(2): 325–344. Published online 2022 Apr 4. doi: 10.1093/toxsci/kfac037
PMCID:
PMC9308396
AbstractArticlePDF–1.6M
4.
Loss of FOCAD, operating via the SKI messenger RNA surveillance pathway, causes a pediatric syndrome with liver cirrhosis
Ricardo Moreno Traspas, Tze Shin Teoh, Pui-Mun Wong, Michael Maier, Crystal Y. Chia, Kenneth Lay, Nur Ain Ali, Austin Larson, Fuad Al Mutairi, Nouriya Abbas Al-Sannaa, Eissa Ali Faqeih, Majid Alfadhel, Huma Arshad Cheema, Juliette Dupont, Stéphane Bézieau, Bertrand Isidor, Dorrain Yanwen Low, Yulan Wang, Grace Tan, Poh San Lai, Hugues Piloquet, Madeleine Joubert, Hulya Kayserili, Kimberly A. Kripps, Shareef A. Nahas, Eric P. Wartchow, Mikako Warren, Gandham SriLakshmi Bhavani, Majed Dasouki, Renata Sandoval, Elisa Carvalho, Luiza Ramos, Gilda Porta, Bin Wu, Harsha Prasada Lashkari, Badr AlSaleem, Raeda M. BaAbbad, Anabela Natália Abreu Ferrão, Vasiliki Karageorgou, Natalia Ordonez-Herrera, Suliman Khan, Peter Bauer, Benjamin Cogne, Aida M. Bertoli-Avella, Marie Vincent, Katta Mohan Girisha, Bruno Reversade
Nat Genet. Author manuscript; available in PMC 2024 Apr 23.
Published in final edited form as: Nat Genet. 2022 Aug 1; 54(8): 1214–1226. Published online 2022 Jul 21. doi: 10.1038/s41588-022-01120-0
PMCID:
PMC7615854
AbstractArticlePDF–3.7M
5.
Thyroid hormone receptors mediate two distinct mechanisms of long-wavelength vision
Leo I. Volkov, Jeong Sook Kim-Han, Lauren M. Saunders, Deepak Poria, Andrew E. O. Hughes, Vladimir J. Kefalov, David M. Parichy, Joseph C. Corbo
Proc Natl Acad Sci U S A. 2020 Jun 30; 117(26): 15262–15269. Published online 2020 Jun 15. doi: 10.1073/pnas.1920086117
Correction in:
Proc Natl Acad Sci U S A. 2021 Nov 30; 118(48): e2118667118.
PMCID:
PMC7334509
AbstractArticlePDF–1.9M
6.
Therapeutic Silencing of Centromere Protein X Ameliorates Hyperglycemia in Zebrafish and Mouse Models of Type 2 Diabetes Mellitus
Liqing Zang, Yasuhito Shimada, Hiroko Nakayama, Wenbiao Chen, Ayaka Okamoto, Hiroyuki Koide, Naoto Oku, Takehisa Dewa, Masayuki Shiota, Norihiro Nishimura
Front Genet. 2019; 10: 693. Published online 2019 Jul 29. doi: 10.3389/fgene.2019.00693
PMCID:
PMC6681619
AbstractArticlePDF–6.5M
7.
Individual long non-coding RNAs have no overt functions in zebrafish embryogenesis, viability and fertility
Mehdi Goudarzi, Kathryn Berg, Lindsey M Pieper, Alexander F Schier
eLife. 2019; 8: e40815. Published online 2019 Jan 8. doi: 10.7554/eLife.40815
PMCID:
PMC6347452
AbstractArticlePDF–3.5M
8.
A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement
Oanh T. P. Kim, Phuong T. Nguyen, Eiichi Shoguchi, Kanako Hisata, Thuy T. B. Vo, Jun Inoue, Chuya Shinzato, Binh T. N. Le, Koki Nishitsuji, Miyuki Kanda, Vu H. Nguyen, Hai V. Nong, Noriyuki Satoh
BMC Genomics. 2018; 19: 733. Published online 2018 Oct 5. doi: 10.1186/s12864-018-5079-x
PMCID:
PMC6173838
AbstractArticlePDF–2.7M
9.
Ancestral TCDD Exposure Induces Multigenerational Histologic and Transcriptomic Alterations in Gonads of Male Zebrafish
Danielle N Meyer, Bridget B Baker, Tracie R Baker
Toxicol Sci. 2018 Aug; 164(2): 603–612. Published online 2018 May 21. doi: 10.1093/toxsci/kfy115
PMCID:
PMC6061693
AbstractArticlePDF–935K
10.
Saprolegnia parasitica Isolated from Rainbow Trout in Korea: Characterization, Anti-Saprolegnia Activity and Host Pathogen Interaction in Zebrafish Disease Model
Sangyeop Shin, D. C. M. Kulatunga, S. H. S. Dananjaya, Chamilani Nikapitiya, Jehee Lee, Mahanama De Zoysa
Mycobiology. 2017 Dec; 45(4): 297–311. Published online 2017 Dec 31. doi: 10.5941/MYCO.2017.45.4.297
PMCID:
PMC5780361
AbstractArticlePDF–18M
11.
Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling
Yelena Chernyavskaya, Raksha Mudbhary, Chi Zhang, Debra Tokarz, Vinitha Jacob, Smita Gopinath, Xiaochen Sun, Shuang Wang, Elena Magnani, Bhavani P. Madakashira, Jeffrey A. Yoder, Yujin Hoshida, Kirsten C. Sadler
Development. 2017 Aug 15; 144(16): 2925–2939. doi: 10.1242/dev.147629
PMCID:
PMC5592811
AbstractArticle
12.
NOD1 deficiency impairs CD44a/Lck as well as PI3K/Akt pathway
Yi Wei Hu, Xiao Man Wu, Shi Si Ren, Lu Cao, Pin Nie, Ming Xian Chang
Sci Rep. 2017; 7: 2979. Published online 2017 Jun 7. doi: 10.1038/s41598-017-03258-y
PMCID:
PMC5462776
AbstractArticlePDF–5.5M
13.
Stem Cell Differentiation Stage Factors from Zebrafish Embryo: A Novel Strategy to Modulate the Fate of Normal and Pathological Human (Stem) Cells
Pier M. Biava, Silvia Canaider, Federica Facchin, Eva Bianconi, Liza Ljungberg, Domenico Rotilio, Fabio Burigana, Carlo Ventura
Curr Pharm Biotechnol. 2015 Sep; 16(9): 782–792. Published online 2015 Sep. doi: 10.2174/1389201016666150629102825
PMCID:
PMC5384357
AbstractArticlePDF–418K
14.
Evolution of complexity in the zebrafish synapse proteome
Àlex Bayés, Mark O. Collins, Rita Reig-Viader, Gemma Gou, David Goulding, Abril Izquierdo, Jyoti S. Choudhary, Richard D. Emes, Seth G. N. Grant
Nat Commun. 2017; 8: 14613. Published online 2017 Mar 2. doi: 10.1038/ncomms14613
PMCID:
PMC5337974
AbstractArticlePDF–2.0M
15.
Alternative haplotypes of antigen processing genes in zebrafish diverged early in vertebrate evolution
Sean C. McConnell, Kyle M. Hernandez, Dustin J. Wcisel, Ross N. Kettleborough, Derek L. Stemple, Jeffrey A. Yoder, Jorge Andrade, Jill L. O. de Jong
Proc Natl Acad Sci U S A. 2016 Aug 23; 113(34): E5014–E5023. Published online 2016 Aug 4. doi: 10.1073/pnas.1607602113
PMCID:
PMC5003237
AbstractArticlePDF–1.5M
16.
A nonclassical MHC class I U lineage locus in zebrafish with a null haplotypic variant
Hayley Dirscherl, Jeffrey A. Yoder
Immunogenetics. Author manuscript; available in PMC 2016 Sep 1.
Published in final edited form as: Immunogenetics. 2015 Sep; 67(9): 501–513. Published online 2015 Aug 9. doi: 10.1007/s00251-015-0862-1
PMCID:
PMC4547470
AbstractArticlePDF–3.1M
17.
Characterization of the Z lineage Major histocompatability complex class I genes in zebrafish
Hayley Dirscherl, Jeffrey A. Yoder
Immunogenetics. Author manuscript; available in PMC 2015 Jul 10.
Published in final edited form as: Immunogenetics. 2014 Mar; 66(3): 185–198. Published online 2013 Nov 28. doi: 10.1007/s00251-013-0748-z
PMCID:
PMC4498805
AbstractArticlePDF–1.5M
18.
The MHC class I genes of zebrafish
Hayley Dirscherl, Sean C. McConnell, Jeffrey A. Yoder, Jill L. O. de Jong
Dev Comp Immunol. Author manuscript; available in PMC 2015 Sep 1.
Published in final edited form as: Dev Comp Immunol. 2014 Sep; 46(1): 11–23. Published online 2014 Mar 11. doi: 10.1016/j.dci.2014.02.018
PMCID:
PMC4031684
AbstractArticlePDF–4.4M
19.
Multiple Divergent Haplotypes Express Completely Distinct Sets of Class I MHC Genes in Zebrafish
Sean C. McConnell, Anthony C. Restaino, Jill L.O. de Jong
Immunogenetics. Author manuscript; available in PMC 2015 Mar 1.
Published in final edited form as: Immunogenetics. 2014 Mar; 66(3): 199–213. Published online 2013 Nov 30. doi: 10.1007/s00251-013-0749-y
PMCID:
PMC3965299
AbstractArticlePDF–2.4M
20.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M

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