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Items: 1 to 20 of 23

1.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
Gene Loss Predictably Drives Evolutionary Adaptation
Jana Helsen, Karin Voordeckers, Laura Vanderwaeren, Toon Santermans, Maria Tsontaki, Kevin J Verstrepen, Rob Jelier
Mol Biol Evol. 2020 Oct; 37(10): 2989–3002. Published online 2020 Jul 13. doi: 10.1093/molbev/msaa172
PMCID:
PMC7530610
AbstractArticlePDF–1.8M
4.
Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell
Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin, Kerry Andrusiak, Anna Kobylianski, Zhijian Li, Michael Costanzo, Munira A Basrai, Guri Giaever, Corey Nislow, Brenda Andrewa, Charles Boone
Nat Biotechnol. Author manuscript; available in PMC 2020 Jul 28.
Published in final edited form as: Nat Biotechnol. 2011 May 15; 29(6): 505–511. Published online 2011 May 15. doi: 10.1038/nbt.1855
PMCID:
PMC7386433
AbstractArticlePDF–1.0M
5.
Yeast α-arrestin Art2 is the key regulator of ubiquitylation-dependent endocytosis of plasma membrane vitamin B1 transporters
Jérôme Savocco, Sylvain Nootens, Wilhelmine Afokpa, Mathilde Bausart, Xiaoqian Chen, Jennifer Villers, Henri-François Renard, Martine Prévost, Ruddy Wattiez, Pierre Morsomme
PLoS Biol. 2019 Oct; 17(10): e3000512. Published online 2019 Oct 28. doi: 10.1371/journal.pbio.3000512
PMCID:
PMC6837554
AbstractArticlePDF–4.4M
6.
A nuclear role for the DEAD-box protein Dbp5 in tRNA export
Azra Lari, Arvind Arul Nambi Rajan, Rima Sandhu, Taylor Reiter, Rachel Montpetit, Barry P Young, Chris JR Loewen, Ben Montpetit
eLife. 2019; 8: e48410. Published online 2019 Aug 27. doi: 10.7554/eLife.48410
Correction in:
eLife. 2020; 9: e63264.
PMCID:
PMC6711706
AbstractArticlePDF–3.8M
7.
Integrating Rio1 activities discloses its nutrient-activated network in Saccharomyces cerevisiae
Maria G Iacovella, Michael Bremang, Omer Basha, Luciano Giacò, Walter Carotenuto, Cristina Golfieri, Barnabas Szakal, Marianna Dal Maschio, Valentina Infantino, Galina V Beznoussenko, Chinnu R Joseph, Clara Visintin, Alexander A Mironov, Rosella Visintin, Dana Branzei, Sébastien Ferreira-Cerca, Esti Yeger-Lotem, Peter De Wulf
Nucleic Acids Res. 2018 Sep 6; 46(15): 7586–7611. Published online 2018 Jul 16. doi: 10.1093/nar/gky618
PMCID:
PMC6125641
AbstractArticlePDF–5.7M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28
Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink
G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317
Correction in:
G3 (Bethesda). 2019 Aug; 9(8): 2787.
PMCID:
PMC5473755
AbstractArticlePDF–2.7M
10.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
11.
Protein-RNA networks revealed through covalent RNA marks
Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens
Nat Methods. Author manuscript; available in PMC 2016 May 18.
Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651
PMCID:
PMC4707952
AbstractArticlePDF–856K
12.
Identification of Yeast and Human 5-Aminoimidazole-4-carboxamide-1-β-d-ribofuranoside (AICAr) Transporters
Johanna Ceschin, Christelle Saint-Marc, Jean Laporte, Adrien Labriet, Chloé Philippe, Michel Moenner, Bertrand Daignan-Fornier, Benoît Pinson
J Biol Chem. 2014 Jun 13; 289(24): 16844–16854. Published online 2014 Apr 28. doi: 10.1074/jbc.M114.551192
PMCID:
PMC4059127
AbstractArticlePDF–1.4M
13.
Discovering Thiamine Transporters as Targets of Chloroquine Using a Novel Functional Genomics Strategy
Zhiwei Huang, Sankaranarayanan Srinivasan, Jianhuai Zhang, Kaifu Chen, Yongxiang Li, Wei Li, Florante A. Quiocho, Xuewen Pan
PLoS Genet. 2012 Nov; 8(11): e1003083. Published online 2012 Nov 29. doi: 10.1371/journal.pgen.1003083
PMCID:
PMC3510038
AbstractArticlePDF–1.0M
14.
A genomic analysis of chronological longevity factors in budding yeast
Christopher R Burtner, Christopher J Murakami, Brady Olsen, Brian K Kennedy, Matt Kaeberlein
Cell Cycle. 2011 May 1; 10(9): 1385–1396. Published online 2011 May 1. doi: 10.4161/cc.10.9.15464
PMCID:
PMC3356828
AbstractArticlePDF–3.2M
15.
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews
Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111
PMCID:
PMC3317160
AbstractArticlePDF–998K
16.
Genome-wide assessment of the carriers involved in the cellular uptake of drugs: a model system in yeast
Karin Lanthaler, Elizabeth Bilsland, Paul D Dobson, Harry J Moss, Pınar Pir, Douglas B Kell, Stephen G Oliver
BMC Biol. 2011; 9: 70. Published online 2011 Oct 24. doi: 10.1186/1741-7007-9-70
PMCID:
PMC3280192
AbstractArticlePDF–1.0M
17.
An integrated approach to characterize genetic interaction networks in yeast metabolism
Balázs Szappanos, Károly Kovács, Béla Szamecz, Frantisek Honti, Michael Costanzo, Anastasia Baryshnikova, Gabriel Gelius-Dietrich, Martin J. Lercher, Márk Jelasity, Chad L. Myers, Brenda J. Andrews, Charles Boone, Stephen G. Oliver, Csaba Pál, Balázs Papp
Nat Genet. Author manuscript; available in PMC 2012 Jan 1.
Published in final edited form as: Nat Genet. 2011 Jul; 43(7): 656–662. Published online 2011 May 29. doi: 10.1038/ng.846
PMCID:
PMC3125439
AbstractArticlePDF–2.5M
18.
Nrt1 and Tna1-Independent Export of NAD+ Precursor Vitamins Promotes NAD+ Homeostasis and Allows Engineering of Vitamin Production
Peter Belenky, Rebecca Stebbins, Katrina L. Bogan, Charles R. Evans, Charles Brenner
PLoS One. 2011; 6(5): e19710. Published online 2011 May 11. doi: 10.1371/journal.pone.0019710
PMCID:
PMC3092764
AbstractArticlePDF–906K
19.
Phosphate-responsive Signaling Pathway Is a Novel Component of NAD+ Metabolism in Saccharomyces cerevisiae
Shu-Ping Lu, Su-Ju Lin
J Biol Chem. 2011 Apr 22; 286(16): 14271–14281. Published online 2011 Feb 24. doi: 10.1074/jbc.M110.217885
PMCID:
PMC3077628
AbstractArticlePDF–1.8M
20.
Thiamine Biosynthesis in Saccharomyces cerevisiae Is Regulated by the NAD+-Dependent Histone Deacetylase Hst1
Mingguang Li, Brian J. Petteys, Julie M. McClure, Veena Valsakumar, Stefan Bekiranov, Elizabeth L. Frank, Jeffrey S. Smith
Mol Cell Biol. 2010 Jul; 30(13): 3329–3341. Published online 2010 May 3. doi: 10.1128/MCB.01590-09
PMCID:
PMC2897578
AbstractArticlePDF–1.5M

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