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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 92098113.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 77580494.

Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae

Joshua J. Black, Richa Sardana, Ezzeddine W. Elmir, Arlen W. Johnson

PLoS Genet. 2020 Dec; 16(12): e1009215. Published online 2020 Dec 11. doi: 10.1371/journal.pgen.1009215

PMCID:: PMC7758049

Abstract Article PDF–4.9M

Select item 76109685.

The Exosome Subunit Rrp44 Plays a Direct Role in RNA Substrate Recognition

Claudia Schneider, James T. Anderson, David Tollervey

Mol Cell. Author manuscript; available in PMC 2021 Jun 11.

Published in final edited form as: Mol Cell. 2007 Jul 20; 27(2): 324–31. doi: 10.1016/j.molcel.2007.06.006

PMCID:: PMC7610968

Abstract Article PDF–1.4M

Select item 75870466.

Rrp6 Moonlights in an RNA Exosome-Independent Manner to Promote Cell Survival and Gene Expression during Stress

Charles Wang, Yanru Liu, Samuel M. DeMario, Igor Mandric, Carlos Gonzalez-Figueroa, Guillaume F. Chanfreau

Cell Rep. Author manuscript; available in PMC 2020 Oct 26.

Published in final edited form as: Cell Rep. 2020 Jun 9; 31(10): 107754. doi: 10.1016/j.celrep.2020.107754

PMCID:: PMC7587046

Abstract Article PDF–1.7M

Select item 69164807.

The ribosome assembly factor Nop53 controls association of the RNA exosome with pre-60S particles in yeast

Leidy Paola P. Cepeda, Felipe F. M. Bagatelli, Renata M. Santos, Marlon D. M. Santos, Fabio C. S. Nogueira, Carla C. Oliveira

J Biol Chem. 2019 Dec 13; 294(50): 19365–19380. Published online 2019 Oct 29. doi: 10.1074/jbc.RA119.010193

PMCID:: PMC6916480

Abstract Article PDF–5.0M

Select item 60976558.

Utp14 interaction with the small subunit processome

Joshua J. Black, Zhaohui Wang, Lisa M. Goering, Arlen W. Johnson

RNA. 2018 Sep; 24(9): 1214–1228. doi: 10.1261/rna.066373.118

PMCID:: PMC6097655

Abstract Article PDF–11M

Select item 58296439.

Structural and functional analysis of ribosome assembly factor Efg1

Sheng Shu, Keqiong Ye

Nucleic Acids Res. 2018 Feb 28; 46(4): 2096–2106. Published online 2018 Jan 18. doi: 10.1093/nar/gky011

PMCID:: PMC5829643

Abstract Article PDF–7.8M

Select item 573835710.

Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly

Miriam Sturm, Jingdong Cheng, Jochen Baßler, Roland Beckmann, Ed Hurt

Nat Commun. 2017; 8: 2213. Published online 2017 Dec 20. doi: 10.1038/s41467-017-02199-4

PMCID:: PMC5738357

Abstract Article PDF–3.1M

Select item 570260911.

Reconstitution of the complete pathway of ITS2 processing at the pre-ribosome

Lisa Fromm, Sebastian Falk, Dirk Flemming, Jan Michael Schuller, Matthias Thoms, Elena Conti, Ed Hurt

Nat Commun. 2017; 8: 1787. Published online 2017 Nov 27. doi: 10.1038/s41467-017-01786-9

PMCID:: PMC5702609

Abstract Article PDF–1.8M

Select item 560372912.

Mpp6 Incorporation in the Nuclear Exosome Contributes to RNA Channeling through the Mtr4 Helicase

Sebastian Falk, Fabien Bonneau, Judith Ebert, Alexander Kögel, Elena Conti

Cell Rep. 2017 Sep 5; 20(10): 2279–2286. Published online 2017 Sep 5. doi: 10.1016/j.celrep.2017.08.033

PMCID:: PMC5603729

Abstract Article

Select item 551937513.

Identification of karyopherins involved in the nuclear import of RNA exosome subunit Rrp6 in Saccharomyces cerevisiae

Fernando A. Gonzales-Zubiate, Ellen K. Okuda, Julia P. C. Da Cunha, Carla Columbano Oliveira

J Biol Chem. 2017 Jul 21; 292(29): 12267–12284. Published online 2017 May 24. doi: 10.1074/jbc.M116.772376

PMCID:: PMC5519375

Abstract Article PDF–3.2M

Select item 534091014.

Mutations of EXOSC3/Rrp40p associated with neurological diseases impact ribosomal RNA processing functions of the exosome in S. cerevisiae

Abby Gillespie, Jason Gabunilas, Joanna C. Jen, Guillaume F. Chanfreau

RNA. 2017 Apr; 23(4): 466–472. doi: 10.1261/rna.060004.116

PMCID:: PMC5340910

Abstract Article PDF–802K

Select item 522350415.

Insight into the RNA Exosome Complex Through Modeling Pontocerebellar Hypoplasia Type 1b Disease Mutations in Yeast

Milo B. Fasken, Jillian S. Losh, Sara W. Leung, Sergine Brutus, Brittany Avin, Jillian C. Vaught, Jennifer Potter-Birriel, Taylor Craig, Graeme L. Conn, Katherine Mills-Lujan, Anita H. Corbett, Ambro van Hoof

Genetics. 2017 Jan; 205(1): 221–237. Published online 2016 Oct 24. doi: 10.1534/genetics.116.195917

PMCID:: PMC5223504

Abstract Article PDF–12M

Select item 512987816.

CryoEM structure of yeast cytoplasmic exosome complex

Jun-Jie Liu, Chu-Ya Niu, Yao Wu, Dan Tan, Yang Wang, Ming-Da Ye, Yang Liu, Wenwei Zhao, Ke Zhou, Quan-Sheng Liu, Junbiao Dai, Xuerui Yang, Meng-Qiu Dong, Niu Huang, Hong-Wei Wang

Cell Res. 2016 Jul; 26(7): 822–837. Published online 2016 May 13. doi: 10.1038/cr.2016.56

PMCID:: PMC5129878

Abstract Article PDF–12M

Select item 494267517.

Structure of a Cytoplasmic 11-Subunit RNA Exosome Complex

Eva Kowalinski, Alexander Kögel, Judith Ebert, Peter Reichelt, Elisabeth Stegmann, Bianca Habermann, Elena Conti

Mol Cell. 2016 Jul 7; 63(1): 125–134. doi: 10.1016/j.molcel.2016.05.028

PMCID:: PMC4942675

Abstract Article

Select item 480331218.

A strategy for dissecting the architectures of native macromolecular assemblies

Yi Shi, Riccardo Pellarin, Peter C. Fridy, Javier Fernandez-Martinez, Mary K. Thompson, Yinyin Li, Qing Jun Wang, Andrej Sali, Michael P. Rout, Brian T. Chait

Nat Methods. Author manuscript; available in PMC 2016 Mar 22.

Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1135–1138. Published online 2015 Oct 5. doi: 10.1038/nmeth.3617