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Items: 1 to 20 of 39

1.
Maf1 phosphorylation is regulated through the action of prefoldin-like Bud27 on PP4 phosphatase in Saccharomyces cerevisiae
Francisco Gutiérrez-Santiago, Verónica Martínez-Fernández, Ana Isabel Garrido-Godino, Cristina Colino-Palomino, Andrés Clemente-Blanco, Christine Conesa, Joël Acker, Francisco Navarro
Nucleic Acids Res. 2024 Jul 8; 52(12): 7081–7095. Published online 2024 May 27. doi: 10.1093/nar/gkae414
PMCID:
PMC11229332
AbstractArticlePDF–1.9M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
SWR1 chromatin remodeling complex prevents mitotic slippage during spindle position checkpoint arrest
Ayse Koca Caydasi, Anton Khmelinskii, Zoulfia Darieva, Bahtiyar Kurtulmus, Michael Knop, Gislene Pereira
Mol Biol Cell. 2023 Feb 1; 34(2): ar11. Published online 2023 Jan 13. doi: 10.1091/mbc.E20-03-0179
PMCID:
PMC9930528
AbstractArticlePDF–8.4M
6.
A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition
Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker
Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0
PMCID:
PMC9673352
AbstractArticlePDF–2.6M
7.
Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress
Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup
Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536
PMCID:
PMC9638028
AbstractArticle
8.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
9.
Exploring a Local Genetic Interaction Network Using Evolutionary Replay Experiments
Ryan C Vignogna, Sean W Buskirk, Gregory I Lang
Mol Biol Evol. 2021 Aug; 38(8): 3144–3152. Published online 2021 Mar 22. doi: 10.1093/molbev/msab087
PMCID:
PMC8321538
AbstractArticlePDF–601K
10.
A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae
Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum
J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628
PMCID:
PMC7325435
AbstractArticle
11.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
12.
Yeast PP4 Interacts with ATR Homolog Ddc2-Mec1 and Regulates Checkpoint Signaling
Nicole Hustedt, Andrew Seeber, Ragna Sack, Monika Tsai-Pflugfelder, Bhupinder Bhullar, Hanneke Vlaming, Fred van Leeuwen, Aude Guénolé, Haico van Attikum, Rohith Srivas, Trey Ideker, Kenji Shimada, Susan M. Gasser
Mol Cell. Author manuscript; available in PMC 2017 Nov 29.
Published in final edited form as: Mol Cell. 2015 Jan 22; 57(2): 273–289. Published online 2014 Dec 18. doi: 10.1016/j.molcel.2014.11.016
PMCID:
PMC5706562
AbstractArticlePDF–1.2M
13.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
14.
A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker
Mol Cell. Author manuscript; available in PMC 2017 Aug 4.
Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022
PMCID:
PMC5209245
AbstractArticlePDF–1.6M
15.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
16.
Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae
Dimitris Kyriakou, Emmanouil Stavrou, Panayiota Demosthenous, Georgia Angelidou, Bryan-Joseph San Luis, Charles Boone, Vasilis J. Promponas, Antonis Kirmizis
BMC Biol. 2016; 14: 106. Published online 2016 Dec 7. doi: 10.1186/s12915-016-0325-7
PMCID:
PMC5142380
AbstractArticlePDF–1.2M
17.
Chromosome Synapsis Alleviates Mek1-Dependent Suppression of Meiotic DNA Repair
Vijayalakshmi V. Subramanian, Amy J. MacQueen, Gerben Vader, Miki Shinohara, Aurore Sanchez, Valérie Borde, Akira Shinohara, Andreas Hochwagen
PLoS Biol. 2016 Feb; 14(2): e1002369. Published online 2016 Feb 12. doi: 10.1371/journal.pbio.1002369
PMCID:
PMC4752329
AbstractArticlePDF–8.7M
18.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
19.
The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation
Lydia M. Castelli, David Talavera, Christopher J. Kershaw, Sarah S. Mohammad-Qureshi, Joseph L. Costello, William Rowe, Paul F. G. Sims, Christopher M. Grant, Simon J. Hubbard, Mark P. Ashe, Graham D. Pavitt
PLoS Genet. 2015 May; 11(5): e1005233. Published online 2015 May 14. doi: 10.1371/journal.pgen.1005233
PMCID:
PMC4431810
AbstractArticlePDF–5.5M
20.
Psy2 Targets the PP4 Family Phosphatase Pph3 To Dephosphorylate Mth1 and Repress Glucose Transporter Gene Expression
Hui Ma, Bong-Kwan Han, Marisela Guaderrama, Aaron Aslanian, John R. Yates, III, Tony Hunter, Curt Wittenberg
Mol Cell Biol. 2014 Feb; 34(3): 452–463. doi: 10.1128/MCB.00279-13
PMCID:
PMC3911506
AbstractArticlePDF–1.2M

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