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Select item 115836861.

Alpha-arrestins Aly1 and Aly2 regulate trafficking of the glycerophosphoinositol transporter Git1 and impact phospholipid homeostasis

Benjamin P. Robinson, Sarah Hawbaker, Annette Chiang, Eric M. Jordahl, Sanket Anaokar, Alexiy Nikiforov, Ray W. Bowman, II, Philip Ziegler, Ceara K. McAtee, Jana Patton-Vogt, Allyson F. O’Donnell

Biol Cell. Author manuscript; available in PMC 2024 Nov 22.

Published in final edited form as: Biol Cell. 2022 Jan; 114(1): 3–31. Published online 2021 Oct 8. doi: 10.1111/boc.202100007

PMCID:: PMC11583686

Abstract Article PDF–4.4M

Select item 114236782.

An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae

Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori

Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749

PMCID:: PMC11423678

Abstract Article PDF–1.7M

Select item 113769633.

ESCRT-dependent protein sorting is required for the viability of yeast clathrin-mediated endocytosis mutants

Kyle Hoban, Samantha Y. Lux, Joanna Poprawski, Yorke Zhang, James Shepherdson, Pedro G. Castiñeira, Sanjana Pesari, Tony Yao, Derek C. Prosser, Carolyn Norris, Beverly Wendland

Traffic. Author manuscript; available in PMC 2024 Sep 5.

Published in final edited form as: Traffic. 2020 Jun; 21(6): 430–450. doi: 10.1111/tra.12731

PMCID:: PMC11376963

Abstract Article PDF–2.9M

Select item 111168124.

Mitochondria–ER–PM contacts regulate mitochondrial division and PI(4)P distribution

Jason C. Casler, Clare S. Harper, Antoineen J. White, Heidi L. Anderson, Laura L. Lackner

J Cell Biol. 2024 Sep 2; 223(9): e202308144. Published online 2024 May 23. doi: 10.1083/jcb.202308144

PMCID:: PMC11116812

Abstract Article PDF–9.2M

Select item 108724775.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001386.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102922107.

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin

Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison

J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060

PMCID:: PMC10292210

Abstract Article PDF–5.9M

Select item 102333688.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 98363489.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 920981110.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 883316211.

ER-phagy requires the assembly of actin at sites of contact between the cortical ER and endocytic pits

Dongmei Liu, Muriel Mari, Xia Li, Fulvio Reggiori, Susan Ferro-Novick, Peter Novick

Proc Natl Acad Sci U S A. 2022 Feb 8; 119(6): e2117554119. Published online 2022 Jan 31. doi: 10.1073/pnas.2117554119

PMCID:: PMC8833162

Abstract Article PDF–2.4M

Select item 868572612.

Endocytic proteins with prion-like domains form viscoelastic condensates that enable membrane remodeling

Louis-Philippe Bergeron-Sandoval, Sandeep Kumar, Hossein Khadivi Heris, Catherine L. A. Chang, Caitlin E. Cornell, Sarah L. Keller, Paul François, Adam G. Hendricks, Allen J. Ehrlicher, Rohit V. Pappu, Stephen W. Michnick

Proc Natl Acad Sci U S A. 2021 Dec 14; 118(50): e2113789118. Published online 2021 Dec 9. doi: 10.1073/pnas.2113789118

PMCID:: PMC8685726

Abstract Article PDF–3.6M

Select item 835352613.

The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription

David Z. Kochan, Julia S. P. Mawer, Jennifer Massen, Kiril Tishinov, Swati Parekh, Martin Graef, Anne Spang, Peter Tessarz

J Cell Sci. 2021 Aug 1; 134(15): jcs259051. Published online 2021 Aug 5. doi: 10.1242/jcs.259051

PMCID:: PMC8353526

Abstract Article

Select item 772147514.

A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits

Florian Wilfling, Chia-Wei Lee, Philipp S. Erdmann, Yumei Zheng, Dawafuti Sherpa, Stefan Jentsch, Boris Pfander, Brenda A. Schulman, Wolfgang Baumeister

Mol Cell. 2020 Dec 3; 80(5): 764–778.e7. doi: 10.1016/j.molcel.2020.10.030

PMCID:: PMC7721475

Abstract Article

Select item 757835515.

Cargo-mediated recruitment of the endocytic adaptor protein Sla1 in S. cerevisiae

Thomas O. Tolsma, Hallie P. Febvre, Deanna M. Olson, Santiago M. Di Pietro

J Cell Sci. 2020 Oct 1; 133(19): jcs247684. Published online 2020 Oct 12. doi: 10.1242/jcs.247684

PMCID:: PMC7578355

Abstract Article

Select item 721840916.

The protein architecture of the endocytic coat analyzed by FRET microscopy

Michal Skruzny, Emma Pohl, Sandina Gnoth, Gabriele Malengo, Victor Sourjik

Mol Syst Biol. 2020 May; 16(5): e9009. Published online 2020 May 13. doi: 10.15252/msb.20199009

PMCID:: PMC7218409

Abstract Article PDF–1.1M

Select item 671170617.

A nuclear role for the DEAD-box protein Dbp5 in tRNA export

Azra Lari, Arvind Arul Nambi Rajan, Rima Sandhu, Taylor Reiter, Rachel Montpetit, Barry P Young, Chris JR Loewen, Ben Montpetit

eLife. 2019; 8: e48410. Published online 2019 Aug 27. doi: 10.7554/eLife.48410

Correction in:: eLife. 2020; 9: e63264.

PMCID:: PMC6711706

Abstract Article PDF–3.8M

Select item 666992218.

Endosome and Golgi‐associated degradation (EGAD) of membrane proteins regulates sphingolipid metabolism

Oliver Schmidt, Yannick Weyer, Verena Baumann, Michael A Widerin, Sebastian Eising, Mihaela Angelova, Alexander Schleiffer, Leopold Kremser, Herbert Lindner, Matthias Peter, Florian Fröhlich, David Teis

EMBO J. 2019 Aug 1; 38(15): e101433. Published online 2019 May 27. doi: 10.15252/embj.2018101433

PMCID:: PMC6669922

Abstract Article PDF–2.8M

Select item 613130619.

Global Deletome Profile of Saccharomyces cerevisiae Exposed to the Technology-Critical Element Yttrium

Nicolas Grosjean, Elisabeth M. Gross, Marie Le Jean, Damien Blaudez

Front Microbiol. 2018; 9: 2005. Published online 2018 Sep 4. doi: 10.3389/fmicb.2018.02005

PMCID:: PMC6131306

Abstract Article PDF–2.7M

Select item 608693220.

Systematic Nanoscale Analysis of Endocytosis Links Efficient Vesicle Formation to Patterned Actin Nucleation

Markus Mund, Johannes Albertus van der Beek, Joran Deschamps, Serge Dmitrieff, Philipp Hoess, Jooske Louise Monster, Andrea Picco, François Nédélec, Marko Kaksonen, Jonas Ries

Cell. 2018 Aug 9; 174(4): 884–896.e17. doi: 10.1016/j.cell.2018.06.032