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Items: 1 to 20 of 48

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
The Role of Chromatin Assembly Factors in Induced Mutagenesis at Low Levels of DNA Damage
Tatiyana A. Evstyukhina, Elena A. Alekseeva, Vyacheslav T. Peshekhonov, Irina I. Skobeleva, Dmitriy V. Fedorov, Vladimir G. Korolev
Genes (Basel) 2023 Jun; 14(6): 1242. Published online 2023 Jun 10. doi: 10.3390/genes14061242
PMCID:
PMC10298286
AbstractArticlePDF–3.5M
4.
The penultimate step of proteasomal ATPase assembly is mediated by a switch dependent on the chaperone Nas2
Suganya Sekaran, Soyeon Park
J Biol Chem. 2023 Feb; 299(2): 102870. Published online 2023 Jan 5. doi: 10.1016/j.jbc.2023.102870
PMCID:
PMC9922823
AbstractArticlePDF–2.0M
5.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
6.
Assembly checkpoint of the proteasome regulatory particle is activated by coordinated actions of proteasomal ATPase chaperones
Asrafun Nahar, Vladyslava Sokolova, Suganya Sekaran, James D. Orth, Soyeon Park
Cell Rep. Author manuscript; available in PMC 2022 Jun 22.
Published in final edited form as: Cell Rep. 2022 Jun 7; 39(10): 110918. doi: 10.1016/j.celrep.2022.110918
PMCID:
PMC9214829
AbstractArticlePDF–1.7M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
The ubiquitin–proteasome system regulates meiotic chromosome organization
Xiao Yang, Meihui Song, Ying Wang, Taicong Tan, Zhongyu Tian, Binyuan Zhai, Xuan Yang, Yingjin Tan, Yanding Cao, Shaojun Dai, Shunxin Wang, Liangran Zhang
Proc Natl Acad Sci U S A. 2022 Apr 26; 119(17): e2106902119. Published online 2022 Apr 19. doi: 10.1073/pnas.2106902119
PMCID:
PMC9169913
AbstractArticlePDF–2.1M
9.
Yeast Nst1 is a novel component of P-bodies and is a specific suppressor of proteasome base assembly defects
Chin Leng Cheng, Michael K. Wong, Mark Hochstrasser
Mol Biol Cell. 2021 Oct 1; 32(20): ar6. doi: 10.1091/mbc.E21-04-0178
PMCID:
PMC8684758
AbstractArticlePDF–2.7M
10.
Genetic Analysis of the Hsm3 Protein Function in Yeast Saccharomyces cerevisiae NuB4 Complex
Tatiyana A. Evstyukhina, Elena A. Alekseeva, Dmitriy V. Fedorov, Vyacheslav T. Peshekhonov, Vladimir G. Korolev
Genes (Basel) 2021 Jul; 12(7): 1083. Published online 2021 Jul 17. doi: 10.3390/genes12071083
PMCID:
PMC8307810
AbstractArticlePDF–2.6M
11.
Conserved proline residues in the coiled coil–OB domain linkers of Rpt proteins facilitate eukaryotic proteasome base assembly
Chin Leng Cheng, Michael K. Wong, Yanjie Li, Mark Hochstrasser
J Biol Chem. 2021 Jan-Jun; 296: 100660. Published online 2021 Apr 14. doi: 10.1016/j.jbc.2021.100660
PMCID:
PMC8134078
AbstractArticlePDF–5.1M
12.
Proteasome Control of [URE3] Prion Propagation by Degradation of Anti-Prion Proteins Cur1 and Btn2 in Saccharomyces cerevisiae
Herman K Edskes, Emily E Stroobant, Morgan P DeWilde, Evgeny E Bezsonov, Reed B Wickner
Genetics. 2021 May; 218(1): iyab037. Published online 2021 Apr 1. doi: 10.1093/genetics/iyab037
PMCID:
PMC8128388
AbstractArticlePDF–862K
13.
Tagging the proteasome active site β5 causes tag specific phenotypes in yeast
Kenrick A. Waite, Alicia Burris, Jeroen Roelofs
Sci Rep. 2020; 10: 18133. Published online 2020 Oct 22. doi: 10.1038/s41598-020-75126-1
PMCID:
PMC7582879
AbstractArticlePDF–1.7M
14.
Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis
Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos
Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022
PMCID:
PMC6715774
AbstractArticle
15.
Two alternative mechanisms regulate the onset of chaperone-mediated assembly of the proteasomal ATPases
Asrafun Nahar, Xinyi Fu, George Polovin, James D. Orth, Soyeon Park
J Biol Chem. 2019 Apr 19; 294(16): 6562–6577. Published online 2019 Feb 27. doi: 10.1074/jbc.RA118.006298
PMCID:
PMC6484131
AbstractArticlePDF–3.1M
16.
Ubiquitin-dependent switch during assembly of the proteasomal ATPases mediated by Not4 ubiquitin ligase
Xinyi Fu, Vladyslava Sokolova, Kristofor J. Webb, William Old, Soyeon Park
Proc Natl Acad Sci U S A. 2018 Dec 26; 115(52): 13246–13251. Published online 2018 Dec 10. doi: 10.1073/pnas.1805353115
PMCID:
PMC6310792
AbstractArticlePDF–1.1M
17.
Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs
Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen
PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319
PMCID:
PMC5922528
AbstractArticlePDF–7.1M
18.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
19.
Capturing the Asc1p/Receptor for Activated C Kinase 1 (RACK1) Microenvironment at the Head Region of the 40S Ribosome with Quantitative BioID in Yeast
Nadine Opitz, Kerstin Schmitt, Verena Hofer-Pretz, Bettina Neumann, Heike Krebber, Gerhard H. Braus, Oliver Valerius
Mol Cell Proteomics. 2017 Dec; 16(12): 2199–2218. Published online 2017 Oct 5. doi: 10.1074/mcp.M116.066654
PMCID:
PMC5724181
AbstractArticlePDF–3.4M
20.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M

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