PMC Links for GEO Profiles (Select 113462228) - PMC

Select item 81650301.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 80239952.

Expression of mitochondrial TSPO and FAM173B is associated with inflammation and symptoms in patients with painful knee osteoarthritis

Vinko Palada, Aisha Siddiqah Ahmed, Anders Hugo, Maja R Radojčić, Camilla I Svensson, Eva Kosek

Rheumatology (Oxford) 2021 Apr; 60(4): 1724–1733. Published online 2020 Oct 17. doi: 10.1093/rheumatology/keaa565

PMCID:: PMC8023995

Abstract Article PDF–305K

Select item 71699833.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 63491014.

Lysine methylation by the mitochondrial methyltransferase FAM173B optimizes the function of mitochondrial ATP synthase

Jędrzej M. Małecki, Hanneke L. D. M. Willemen, Rita Pinto, Angela Y. Y. Ho, Anders Moen, Ingrid F. Kjønstad, Boudewijn M. T. Burgering, Fried Zwartkruis, Niels Eijkelkamp, Pål Ø. Falnes

J Biol Chem. 2019 Jan 25; 294(4): 1128–1141. Published online 2018 Dec 10. doi: 10.1074/jbc.RA118.005473

PMCID:: PMC6349101

Abstract Article PDF–3.7M

Select item 58284525.

Identification of FAM173B as a protein methyltransferase promoting chronic pain

Hanneke L. D. M. Willemen, Annemieke Kavelaars, Judith Prado, Mirjam Maas, Sabine Versteeg, Lara J. J. Nellissen, Jeshua Tromp, Rafael Gonzalez Cano, Wenjun Zhou, Magnus E. Jakobsson, Jędrzej Małecki, George Posthuma, Abdella M. Habib, Cobi J. Heijnen, Pål Ø. Falnes, Niels Eijkelkamp

PLoS Biol. 2018 Feb; 16(2): e2003452. Published online 2018 Feb 14. doi: 10.1371/journal.pbio.2003452

PMCID:: PMC5828452

Abstract Article PDF–36M

Select item 56785816.

RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination

Nila Roy Choudhury, Gregory Heikel, Maryia Trubitsyna, Peter Kubik, Jakub Stanislaw Nowak, Shaun Webb, Sander Granneman, Christos Spanos, Juri Rappsilber, Alfredo Castello, Gracjan Michlewski

BMC Biol. 2017; 15: 105. Published online 2017 Nov 8. doi: 10.1186/s12915-017-0444-9

PMCID:: PMC5678581

Abstract Article PDF–3.2M

Select item 55283007.

Altered JS‐2 expression in colorectal cancers and its clinical pathological relevance

Alfred King-Yin Lam, Vinod Gopalan, Mohammad Reza Nassiri, Kais Kasim, Jayampathy Dissanayake, Johnny Chuek-On Tang, Robert Anthony Smith

Mol Oncol. 2011 Oct; 5(5): 475–481. Published online 2011 Jul 12. doi: 10.1016/j.molonc.2011.06.003

PMCID:: PMC5528300

Abstract Article PDF–260K

Select item 48416078.

High-throughput analyses of hnRNP H1 dissects its multi-functional aspect

Philip J. Uren, Emad Bahrami-Samani, Patricia Rosa de Araujo, Christine Vogel, Mei Qiao, Suzanne C. Burns, Andrew D. Smith, Luiz O. F. Penalva

RNA Biol. 2016 Apr; 13(4): 400–411. Published online 2016 Jan 13. doi: 10.1080/15476286.2015.1138030

PMCID:: PMC4841607

Abstract Article PDF–1.6M

Select item 46479419.

hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes

Philippe Lamesch, Ning Li, Stuart Milstein, Changyu Fan, Tong Hao, Gabor Szabo, Zhenjun Hu, Kavitha Venkatesan, Graeme Bethel, Paul Martin, Jane Rogers, Stephanie Lawlor, Stuart McLaren, Amélie Dricot, Heather Borick, Michael E. Cusick, Jean Vandenhaute, Ian Dunham, David E. Hill, Marc Vidal

Genomics. 2007 Mar; 89(3): 307–315. doi: 10.1016/j.ygeno.2006.11.012

PMCID:: PMC4647941

Abstract Article

Select item 369195110.

Genome-wide association study meta-analysis of chronic widespread pain: evidence for involvement of the 5p15.2 region

Marjolein J Peters, Linda Broer, Hanneke L D M Willemen, Gudny Eiriksdottir, Lynne J Hocking, Kate L Holliday, Michael A Horan, Ingrid Meulenbelt, Tuhina Neogi, Maria Popham, Carsten O Schmidt, Anushka Soni, Ana M Valdes, Najaf Amin, Elaine M Dennison, Niels Eijkelkamp, Tamara B Harris, Deborah J Hart, Albert Hofman, Frank J P M Huygen, Karen A Jameson, Gareth T Jones, Lenore J Launer, Hanneke J M Kerkhof, Marjolein de Kruijf, John McBeth, Margreet Kloppenburg, William E Ollier, Ben Oostra, Antony Payton, Fernando Rivadeneira, Blair H Smith, Albert V Smith, Lisette Stolk, Alexander Teumer, Wendy Thomson, André G Uitterlinden, Ke Wang, Sophie H van Wingerden, Nigel K Arden, Cyrus Cooper, David Felson, Vilmundur Gudnason, Gary J Macfarlane, Neil Pendleton, P Eline Slagboom, Tim D Spector, Henry Völzke, Annemieke Kavelaars, Cornelia M van Duijn, Frances M K Williams, Joyce B J van Meurs

Ann Rheum Dis. 2013 Mar; 72(3): 427–436. Published online 2012 Sep 6. doi: 10.1136/annrheumdis-2012-201742

PMCID:: PMC3691951

Abstract Article PDF–402K

Select item 317805911.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 289646412.

Personalized Smoking Cessation: Interactions between Nicotine Dose, Dependence and Quit-Success Genotype Score

Jed E Rose, Frédérique M Behm, Tomas Drgon, Catherine Johnson, George R Uhl

Mol Med. 2010 Jul-Aug; 16(7-8): 247–253. Published online 2010 Mar 17. doi: 10.2119/molmed.2009.00159

Correction in:: Mol Med. 2012; 18(1): 729.

PMCID:: PMC2896464

Abstract Article PDF–2.4M

Select item 268887713.

The transcriptome of human CD34⁺ hematopoietic stem-progenitor cells

Yeong C. Kim, Qingfa Wu, Jun Chen, Zhenyu Xuan, Yong-Chul Jung, Michael Q. Zhang, Janet D. Rowley, San Ming Wang

Proc Natl Acad Sci U S A. 2009 May 19; 106(20): 8278–8283. Published online 2009 Apr 30. doi: 10.1073/pnas.0903390106

PMCID:: PMC2688877

Abstract Article PDF–737K

Select item 135612914.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406

PMCID:: PMC1356129

Abstract Article PDF–438K

Select item 13924115.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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