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Select item 113624591.

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation

Lisa Kofler, Lorenz Grundmann, Magdalena Gerhalter, Michael Prattes, Juliane Merl-Pham, Gertrude Zisser, Irina Grishkovskaya, Victor-Valentin Hodirnau, Martin Vareka, Rolf Breinbauer, Stefanie M. Hauck, David Haselbach, Helmut Bergler

Nat Commun. 2024; 15: 7511. Published online 2024 Aug 29. doi: 10.1038/s41467-024-51754-3

PMCID:: PMC11362459

Abstract Article PDF–3.5M

Select item 98811582.

The DEAD-box protein Dbp6 is an ATPase and RNA annealase interacting with the peptidyl transferase center (PTC) of the ribosome

Ali Khreiss, Régine Capeyrou, Simon Lebaron, Benjamin Albert, Katherine E Bohnsack, Markus T Bohnsack, Yves Henry, Anthony K Henras, Odile Humbert

Nucleic Acids Res. 2023 Jan 25; 51(2): 744–764. Published online 2023 Jan 5. doi: 10.1093/nar/gkac1196

PMCID:: PMC9881158

Abstract Article PDF–4.1M

Select item 95079693.

Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1

Michael Prattes, Irina Grishkovskaya, Victor-Valentin Hodirnau, Christina Hetzmannseder, Gertrude Zisser, Carolin Sailer, Vasileios Kargas, Mathias Loibl, Magdalena Gerhalter, Lisa Kofler, Alan J. Warren, Florian Stengel, David Haselbach, Helmut Bergler

Nat Struct Mol Biol. 2022; 29(9): 942–953. Published online 2022 Sep 12. doi: 10.1038/s41594-022-00832-5

PMCID:: PMC9507969

Abstract Article PDF–9.4M

Select item 86102664.

Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors

Gisela Pöll, Michael Pilsl, Joachim Griesenbeck, Herbert Tschochner, Philipp Milkereit

PLoS One. 2021; 16(11): e0252497. Published online 2021 Nov 23. doi: 10.1371/journal.pone.0252497

PMCID:: PMC8610266

Abstract Article PDF–3.9M

Select item 85367135.

The RNA helicase Dbp7 promotes domain V/VI compaction and stabilization of inter-domain interactions during early 60S assembly

Gerald Ryan R. Aquino, Philipp Hackert, Nicolai Krogh, Kuan-Ting Pan, Mariam Jaafar, Anthony K. Henras, Henrik Nielsen, Henning Urlaub, Katherine E. Bohnsack, Markus T. Bohnsack

Nat Commun. 2021; 12: 6152. Published online 2021 Oct 22. doi: 10.1038/s41467-021-26208-9

PMCID:: PMC8536713

Abstract Article PDF–3.9M

Select item 83389416.

Puf6 primes 60S pre-ribosome nuclear export at low temperature

Stefan Gerhardy, Michaela Oborská-Oplová, Ludovic Gillet, Richard Börner, Rob van Nues, Alexander Leitner, Erich Michel, Janusz J. Petkowski, Sander Granneman, Roland K. O. Sigel, Ruedi Aebersold, Vikram Govind Panse

Nat Commun. 2021; 12: 4696. Published online 2021 Aug 4. doi: 10.1038/s41467-021-24964-2

PMCID:: PMC8338941

Abstract Article PDF–5.7M

Select item 71455567.

A role for the Saccharomyces cerevisiae ABCF protein New1 in translation termination/recycling

Villu Kasari, Agnieszka A Pochopien, Tõnu Margus, Victoriia Murina, Kathryn Turnbull, Yang Zhou, Tracy Nissan, Michael Graf, Jiří Nováček, Gemma C Atkinson, Marcus J O Johansson, Daniel N Wilson, Vasili Hauryliuk

Nucleic Acids Res. 2019 Sep 19; 47(16): 8807–8820. Published online 2019 Jul 12. doi: 10.1093/nar/gkz600

PMCID:: PMC7145556

Abstract Article PDF–4.9M

Select item 71029558.

rRNA expansion segment 27Lb modulates the factor recruitment capacity of the yeast ribosome and shapes the proteome

Vaishnavi Shankar, Robert Rauscher, Julia Reuther, Walid H Gharib, Miriam Koch, Norbert Polacek

Nucleic Acids Res. 2020 Apr 6; 48(6): 3244–3256. Published online 2020 Jan 21. doi: 10.1093/nar/gkaa003

PMCID:: PMC7102955

Abstract Article PDF–3.5M

Select item 68466849.

At least two molecules of the RNA helicase Has1 are simultaneously present in pre-ribosomes during ribosome biogenesis

Sivakumar Vadivel Gnanasundram, Isabelle C Kos-Braun, Martin Koš

Nucleic Acids Res. 2019 Nov 18; 47(20): 10852–10864. Published online 2019 Sep 12. doi: 10.1093/nar/gkz767

PMCID:: PMC6846684

Abstract Article PDF–6.9M

Select item 657951810.

Mechanism of completion of peptidyltransferase centre assembly in eukaryotes

Vasileios Kargas, Pablo Castro-Hartmann, Norberto Escudero-Urquijo, Kyle Dent, Christine Hilcenko, Carolin Sailer, Gertrude Zisser, Maria J Marques-Carvalho, Simone Pellegrino, Leszek Wawiórka, Stefan MV Freund, Jane L Wagstaff, Antonina Andreeva, Alexandre Faille, Edwin Chen, Florian Stengel, Helmut Bergler, Alan John Warren

eLife. 2019; 8: e44904. Published online 2019 May 22. doi: 10.7554/eLife.44904

PMCID:: PMC6579518

Abstract Article PDF–7.9M

Select item 640712911.

Decoding the Function of Expansion Segments in Ribosomes

Kotaro Fujii, Teodorus Theo Susanto, Saumya Saurabh, Maria Barna

Mol Cell. Author manuscript; available in PMC 2019 Dec 20.

Published in final edited form as: Mol Cell. 2018 Dec 20; 72(6): 1013–1020.e6. doi: 10.1016/j.molcel.2018.11.023

PMCID:: PMC6407129

Abstract Article PDF–1.8M

Select item 630060212.

RNA helicases mediate structural transitions and compositional changes in pre-ribosomal complexes

Lukas Brüning, Philipp Hackert, Roman Martin, Jimena Davila Gallesio, Gerald Ryan R. Aquino, Henning Urlaub, Katherine E. Sloan, Markus T. Bohnsack

Nat Commun. 2018; 9: 5383. Published online 2018 Dec 19. doi: 10.1038/s41467-018-07783-w

PMCID:: PMC6300602

Abstract Article PDF–3.9M

Select item 613679913.

The Npa1p complex chaperones the assembly of the earliest eukaryotic large ribosomal subunit precursor

Clément Joret, Régine Capeyrou, Kamila Belhabich-Baumas, Célia Plisson-Chastang, Rabea Ghandour, Odile Humbert, Sébastien Fribourg, Nicolas Leulliot, Simon Lebaron, Anthony K. Henras, Yves Henry

PLoS Genet. 2018 Aug; 14(8): e1007597. Published online 2018 Aug 31. doi: 10.1371/journal.pgen.1007597

PMCID:: PMC6136799

Abstract Article PDF–15M

Select item 608528414.

A single N¹-methyladenosine on the large ribosomal subunit rRNA impacts locally its structure and the translation of key metabolic enzymes

Sunny Sharma, Johannes David Hartmann, Peter Watzinger, Arvid Klepper, Christian Peifer, Peter Kötter, Denis L. J. Lafontaine, Karl-Dieter Entian

Sci Rep. 2018; 8: 11904. Published online 2018 Aug 9. doi: 10.1038/s41598-018-30383-z

PMCID:: PMC6085284

Abstract Article PDF–6.3M

Select item 588816015.

Viewing pre-60S maturation at a minute’s timescale

Gertrude Zisser, Uli Ohmayer, Christina Mauerhofer, Valentin Mitterer, Isabella Klein, Gerald N Rechberger, Heimo Wolinski, Michael Prattes, Brigitte Pertschy, Philipp Milkereit, Helmut Bergler

Nucleic Acids Res. 2018 Apr 6; 46(6): 3140–3151. Published online 2017 Dec 27. doi: 10.1093/nar/gkx1293

PMCID:: PMC5888160

Abstract Article PDF–5.9M

Select item 577562016.

Nutrient depletion and TOR inhibition induce 18S and 25S ribosomal RNAs resistant to a 5′-phosphate-dependent exonuclease in Candida albicans and other yeasts

Jacob Fleischmann, Miguel A. Rocha

BMC Mol Biol. 2018; 19: 1. Published online 2018 Jan 19. doi: 10.1186/s12867-018-0102-y

PMCID:: PMC5775620

Abstract Article PDF–1.2M

Select item 555558417.

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound by Nmd3, Lsg1, Tif6 and Reh1

Chengying Ma, Shan Wu, Ningning Li, Yan Chen, Kaige Yan, Zhifei Li, Lvqin Zheng, Jianlin Lei, John L Woolford, Jr, Ning Gao

Nat Struct Mol Biol. Author manuscript; available in PMC 2017 Aug 14.

Published in final edited form as: Nat Struct Mol Biol. 2017 Mar; 24(3): 214–220. Published online 2017 Jan 23. doi: 10.1038/nsmb.3364

PMCID:: PMC5555584

Abstract Article PDF–2.5M

Select item 550141018.

Structural transitions during large ribosomal subunit maturation analyzed by tethered nuclease structure probing in S. cerevisiae

Gisela Pöll, Christian Müller, Malena Bodden, Fabian Teubl, Norbert Eichner, Gerhard Lehmann, Joachim Griesenbeck, Herbert Tschochner, Philipp Milkereit

PLoS One. 2017; 12(7): e0179405. Published online 2017 Jul 7. doi: 10.1371/journal.pone.0179405

PMCID:: PMC5501410

Abstract Article PDF–13M

Select item 532231719.

Ricin uses arginine 235 as an anchor residue to bind to P-proteins of the ribosomal stalk

Yijun Zhou, Xiao-Ping Li, Brian Y. Chen, Nilgun E. Tumer

Sci Rep. 2017; 7: 42912. Published online 2017 Feb 23. doi: 10.1038/srep42912

PMCID:: PMC5322317

Abstract Article PDF–1.8M

Select item 523736120.

Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes

Shan Wu, Beril Tutuncuoglu, Kaige Yan, Hailey Brown, Yixiao Zhang, Dan Tan, Michael Gamalinda, Yi Yuan, Zhifei Li, Jelena Jakovljevic, Chengying Ma, Jianlin Lei, Meng-Qiu Dong, John L. Woolford, Jr, Ning Gao

Nature. Author manuscript; available in PMC 2017 Jan 14.

Published in final edited form as: Nature. 2016 Jun 2; 534(7605): 133–137. doi: 10.1038/nature17942