PMC Links for GEO Profiles (Select 11387327) - PMC

Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 92098112.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 75156943.

RNA-binding and prion domains: the Yin and Yang of phase separation

Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia

Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681

PMCID:: PMC7515694

Abstract Article PDF–3.1M

Select item 57653594.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 56480325.

Architecture and dynamics of overlapped RNA regulatory networks

Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens

RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117

PMCID:: PMC5648032

Abstract Article PDF–6.6M

Select item 52043486.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 45732577.

TRMT5 Mutations Cause a Defect in Post-transcriptional Modification of Mitochondrial tRNA Associated with Multiple Respiratory-Chain Deficiencies

Christopher A. Powell, Robert Kopajtich, Aaron R. D’Souza, Joanna Rorbach, Laura S. Kremer, Ralf A. Husain, Cristina Dallabona, Claudia Donnini, Charlotte L. Alston, Helen Griffin, Angela Pyle, Patrick F. Chinnery, Tim M. Strom, Thomas Meitinger, Richard J. Rodenburg, Gudrun Schottmann, Markus Schuelke, Nadine Romain, Ronald G. Haller, Ileana Ferrero, Tobias B. Haack, Robert W. Taylor, Holger Prokisch, Michal Minczuk

Am J Hum Genet. 2015 Aug 6; 97(2): 319–328. doi: 10.1016/j.ajhg.2015.06.011

PMCID:: PMC4573257

Abstract Article PDF–1.5M

Select item 36839168.

The rRNA methyltransferase Bud23 shows functional interaction with components of the SSU processome and RNase MRP

Richa Sardana, Joshua P. White, Arlen W. Johnson

RNA. 2013 Jun; 19(6): 828–840. doi: 10.1261/rna.037671.112

PMCID:: PMC3683916

Abstract Article PDF–784K

Select item 35649879.

Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork

Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter

G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754

PMCID:: PMC3564987

Abstract Article PDF–2.3M

Select item 355349710.

The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis

Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman

Cell. Author manuscript; available in PMC 2014 Jan 17.

Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001

PMCID:: PMC3553497

Abstract Article PDF–5.1M

Select item 312788511.

Retrograde nuclear import of tRNA precursors is required for modified base biogenesis in yeast

Takayuki Ohira, Tsutomu Suzuki

Proc Natl Acad Sci U S A. 2011 Jun 28; 108(26): 10502–10507. Published online 2011 Jun 13. doi: 10.1073/pnas.1105645108

PMCID:: PMC3127885

Abstract Article PDF–836K

Select item 282475312.

Proteasome Nuclear Activity Affects Chromosome Stability by Controlling the Turnover of Mms22, a Protein Important for DNA Repair

Shay Ben-Aroya, Neta Agmon, Karen Yuen, Teresa Kwok, Kirk McManus, Martin Kupiec, Philip Hieter

PLoS Genet. 2010 Feb; 6(2): e1000852. Published online 2010 Feb 19. doi: 10.1371/journal.pgen.1000852

PMCID:: PMC2824753

Abstract Article PDF–999K

Select item 240923413.

Association of yeast Upf1p with direct substrates of the NMD pathway

Marcus J. O. Johansson, Feng He, Phyllis Spatrick, Chunfang Li, Allan Jacobson

Proc Natl Acad Sci U S A. 2007 Dec 26; 104(52): 20872–20877. Published online 2007 Dec 17. doi: 10.1073/pnas.0709257105

PMCID:: PMC2409234

Abstract Article PDF–864K

Select item 219642514.

A protein interaction map for cell polarity development

Becky L. Drees, Bryan Sundin, Elizabeth Brazeau, Juliane P. Caviston, Guang-Chao Chen, Wei Guo, Keith G. Kozminski, Michelle W. Lau, John J. Moskow, Amy Tong, Laura R. Schenkman, Amos McKenzie, III, Patrick Brennwald, Mark Longtine, Erfei Bi, Clarence Chan, Peter Novick, Charles Boone, John R. Pringle, Trisha N. Davis, Stanley Fields, David G. Drubin

J Cell Biol. 2001 Aug 6; 154(3): 549–576. doi: 10.1083/jcb.200104057

PMCID:: PMC2196425

Abstract Article PDF–868K

Select item 54617415.

Detection and discovery of RNA modifications using microarrays

Shawna L. Hiley, Jane Jackman, Tomas Babak, Miles Trochesset, Quaid D. Morris, Eric Phizicky, Timothy R. Hughes

Nucleic Acids Res. 2005; 33(1): e2. Published online 2005 Jan 7. doi: 10.1093/nar/gni002

PMCID:: PMC546174

Abstract Article PDF–4.2M

Select item 15535816.

Subcellular localization of the yeast proteome

Anuj Kumar, Seema Agarwal, John A. Heyman, Sandra Matson, Matthew Heidtman, Stacy Piccirillo, Lara Umansky, Amar Drawid, Ronald Jansen, Yang Liu, Kei-Hoi Cheung, Perry Miller, Mark Gerstein, G. Shirleen Roeder, Michael Snyder

Genes Dev. 2002 Mar 15; 16(6): 707–719. doi: 10.1101/gad.970902

PMCID:: PMC155358

Abstract Article PDF–358K

Select item 14019317.

A primordial tRNA modification required for the evolution of life?

Glenn R. Björk, Kerstin Jacobsson, Kristina Nilsson, Marcus J.O. Johansson, Anders S. Byström, Olof P. Persson

EMBO J. 2001 Jan 15; 20(1-2): 231–239. doi: 10.1093/emboj/20.1.231

PMCID:: PMC140193

Abstract Article PDF–246K

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