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Items: 19

1.
mTORC2 interactome and localization determine aggressiveness of high-grade glioma cells through association with gelsolin
Naphat Chantaravisoot, Piriya Wongkongkathep, Nuttiya Kalpongnukul, Narawit Pacharakullanon, Pornchai Kaewsapsak, Chaiyaboot Ariyachet, Joseph A. Loo, Fuyuhiko Tamanoi, Trairak Pisitkun
Sci Rep. 2023; 13: 7037. Published online 2023 Apr 29. doi: 10.1038/s41598-023-33872-y
PMCID:
PMC10148843
AbstractArticlePDF–11M
2.
BioID reveals an ATG9A interaction with ATG13‐ATG101 in the degradation of p62/SQSTM1‐ubiquitin clusters
Ashari R Kannangara, Daniel M Poole, Colten M McEwan, Joshua C Youngs, Vajira K Weerasekara, Alex M Thornock, Misael T Lazaro, Eranga R Balasooriya, Laura M Oh, Erik J Soderblom, Jonathan J Lee, Daniel L Simmons, Joshua L Andersen
EMBO Rep. 2021 Oct 5; 22(10): e51136. Published online 2021 Aug 9. doi: 10.15252/embr.202051136
PMCID:
PMC8490997
AbstractArticlePDF–4.5M
3.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
4.
Interactome analysis reveals that lncRNA HULC promotes aerobic glycolysis through LDHA and PKM2
Chunqing Wang, Yongmei Li, Shuai Yan, Hao Wang, Xianfeng Shao, Mingming Xiao, Baicai Yang, Guoxuan Qin, Ruirui Kong, Ruibing Chen, Ning Zhang
Nat Commun. 2020; 11: 3162. Published online 2020 Jun 22. doi: 10.1038/s41467-020-16966-3
PMCID:
PMC7308313
AbstractArticlePDF–2.9M
5.
RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination
Nila Roy Choudhury, Gregory Heikel, Maryia Trubitsyna, Peter Kubik, Jakub Stanislaw Nowak, Shaun Webb, Sander Granneman, Christos Spanos, Juri Rappsilber, Alfredo Castello, Gracjan Michlewski
BMC Biol. 2017; 15: 105. Published online 2017 Nov 8. doi: 10.1186/s12915-017-0444-9
PMCID:
PMC5678581
AbstractArticlePDF–3.2M
6.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
7.
An organelle-specific protein landscape identifies novel diseases and molecular mechanisms
Karsten Boldt, Jeroen van Reeuwijk, Qianhao Lu, Konstantinos Koutroumpas, Thanh-Minh T. Nguyen, Yves Texier, Sylvia E. C. van Beersum, Nicola Horn, Jason R. Willer, Dorus A. Mans, Gerard Dougherty, Ideke J. C. Lamers, Karlien L. M. Coene, Heleen H. Arts, Matthew J. Betts, Tina Beyer, Emine Bolat, Christian Johannes Gloeckner, Khatera Haidari, Lisette Hetterschijt, Daniela Iaconis, Dagan Jenkins, Franziska Klose, Barbara Knapp, Brooke Latour, Stef J. F. Letteboer, Carlo L. Marcelis, Dragana Mitic, Manuela Morleo, Machteld M. Oud, Moniek Riemersma, Susan Rix, Paulien A. Terhal, Grischa Toedt, Teunis J. P. van Dam, Erik de Vrieze, Yasmin Wissinger, Ka Man Wu, Gordana Apic, Philip L. Beales, Oliver E. Blacque, Toby J. Gibson, Martijn A. Huynen, Nicholas Katsanis, Hannie Kremer, Heymut Omran, Erwin van Wijk, Uwe Wolfrum, François Kepes, Erica E. Davis, Brunella Franco, Rachel H. Giles, Marius Ueffing, Robert B. Russell, Ronald Roepman, UK10K Rare Diseases Group
Nat Commun. 2016; 7: 11491. Published online 2016 May 13. doi: 10.1038/ncomms11491
PMCID:
PMC4869170
AbstractArticlePDF–2.0M
8.
Secretory protein trafficking and organelle dynamics in living cells.
J Lippincott-Schwartz, T H Roberts, K Hirschberg
Annu Rev Cell Dev Biol. 2000; 16: 557–589. doi: 10.1146/annurev.cellbio.16.1.557
PMCID:
PMC4781643
AbstractArticle
9.
A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466
PMCID:
PMC4764573
AbstractArticlePDF–5.7M
10.
The BioPlex Network: A Systematic Exploration of the Human Interactome
Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2016 Jul 16.
Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043
PMCID:
PMC4617211
AbstractArticlePDF–2.2M
11.
A BLOC-1 Mutation Screen Reveals a Novel BLOC1S3 Mutation in Hermansky-Pudlak Syndrome Type 8 (HPS-8)
Andrew R Cullinane, James A Curry, Gretchen Golas, James Pan, Carmelo Carmona-Rivera, Richard A Hess, James G White, Marjan Huizing, William A Gahl
Pigment Cell Melanoma Res. Author manuscript; available in PMC 2013 Sep 1.
Published in final edited form as: Pigment Cell Melanoma Res. 2012 Sep; 25(5): 584–591. Published online 2012 Aug 2. doi: 10.1111/j.1755-148X.2012.01029.x
PMCID:
PMC3501949
AbstractArticlePDF–1.2M
12.
Assembly and Architecture of Biogenesis of Lysosome-related Organelles Complex-1 (BLOC-1)
Hyung Ho Lee, Daniel Nemecek, Christina Schindler, William J. Smith, Rodolfo Ghirlando, Alasdair C. Steven, Juan S. Bonifacino, James H. Hurley
J Biol Chem. 2012 Feb 17; 287(8): 5882–5890. Published online 2011 Dec 27. doi: 10.1074/jbc.M111.325746
PMCID:
PMC3285357
AbstractArticlePDF–1.4M
13.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
14.
Genome-wide Analysis of Genetic Loci Associated with Alzheimer’s Disease
Sudha Seshadri, Annette L. Fitzpatrick, M Arfan Ikram, Anita L. DeStefano, Vilmundur Gudnason, Merce Boada, Joshua C. Bis, Albert V. Smith, Minerva M. Carassquillo, Jean Charles Lambert, Denise Harold, Elisabeth M. C. Schrijvers, Reposo Ramirez-Lorca, Stephanie Debette, W.T. Longstreth, Jr., A. Cecile J.W. Janssens, V. Shane Pankratz, Jean François Dartigues, Paul Hollingworth, Thor Aspelund, Isabel Hernandez, Alexa Beiser, Lewis H. Kuller, Peter J. Koudstaal, Dennis W. Dickson, Christophe Tzourio, Richard Abraham, Carmen Antunez, Yangchun Du, Jerome I. Rotter, Yurii S. Aulchenko, Tamara B. Harris, Ronald C. Petersen, Claudine Berr, Michael J. Owen, Jesus Lopez-Arrieta, Badri N. Varadarajan, James T. Becker, Fernando Rivadeneira, Michael A. Nalls, Neill R. Graff-Radford, Dominique Campion, Sanford Auerbach, Kenneth Rice, Albert Hofman, Palmi V. Jonsson, Helena Schmidt, Mark Lathrop, Thomas H. Mosley, Rhoda Au, Bruce M. Psaty, Andre G. Uitterlinden, Lindsay A. Farrer, Thomas Lumley, Agustin Ruiz, Julie Williams, Philippe Amouyel, Steve G. Younkin, Philip A. Wolf, Lenore J. Launer, Oscar L. Lopez, Cornelia M. van Duijn, Monique M. B. Breteler
JAMA. Author manuscript; available in PMC 2011 May 12.
Published in final edited form as: JAMA. 2010 May 12; 303(18): 1832–1840. doi: 10.1001/jama.2010.574
PMCID:
PMC2989531
AbstractArticlePDF–388K
15.
Hermansky-Pudlak syndrome type 7 (HPS-7) results from mutant dysbindin, a member of the biogenesis of lysosome-related organelles complex 1 (BLOC-1)
Wei Li, Qing Zhang, Naoki Oiso, Edward K Novak, Rashi Gautam, Edward P O'Brien, Caroline L Tinsley, Derek J Blake, Richard A Spritz, Neal G Copeland, Nancy A Jenkins, Dominick Amato, Bruce A Roe, Marta Starcevic, Esteban C Dell'Angelica, Rosemary W Elliott, Vishnu Mishra, Stephen F Kingsmore, Richard E Paylor, Richard T Swank
Nat Genet. Author manuscript; available in PMC 2010 Apr 28.
Published in final edited form as: Nat Genet. 2003 Sep; 35(1): 84–89. Published online 2003 Aug 17. doi: 10.1038/ng1229
PMCID:
PMC2860733
AbstractArticlePDF–648K
16.
Genome-Wide Association Studies in an Isolated Founder Population from the Pacific Island of Kosrae
Jennifer K. Lowe, Julian B. Maller, Itsik Pe'er, Benjamin M. Neale, Jacqueline Salit, Eimear E. Kenny, Jessica L. Shea, Ralph Burkhardt, J. Gustav Smith, Weizhen Ji, Martha Noel, Jia Nee Foo, Maude L. Blundell, Vita Skilling, Laura Garcia, Marcia L. Sullivan, Heather E. Lee, Anna Labek, Hope Ferdowsian, Steven B. Auerbach, Richard P. Lifton, Christopher Newton-Cheh, Jan L. Breslow, Markus Stoffel, Mark J. Daly, David M. Altshuler, Jeffrey M. Friedman
PLoS Genet. 2009 Feb; 5(2): e1000365. Published online 2009 Feb 6. doi: 10.1371/journal.pgen.1000365
PMCID:
PMC2628735
AbstractArticlePDF–377K
17.
BLOC-1 Is Required for Cargo-specific Sorting from Vacuolar Early Endosomes toward Lysosome-related Organelles
Subba Rao Gangi Setty, Danièle Tenza, Steven T. Truschel, Evelyn Chou, Elena V. Sviderskaya, Alexander C. Theos, M. Lynn Lamoreux, Santiago M. Di Pietro, Marta Starcevic, Dorothy C. Bennett, Esteban C. Dell'Angelica, Graça Raposo, Michael S. Marks
Mol Biol Cell. 2007 Mar; 18(3): 768–780. doi: 10.1091/mbc.E06-12-1066
Correction in:
Mol Biol Cell. 2017 Feb 1; 28(3): 500.
PMCID:
PMC1805088
AbstractArticlePDF–4.3M
18.
A Germline Mutation in BLOC1S3/Reduced Pigmentation Causes a Novel Variant of Hermansky-Pudlak Syndrome (HPS8)
Neil V. Morgan, Shanaz Pasha, Colin A. Johnson, John R. Ainsworth, Robin A. J. Eady, Ban Dawood, Carole McKeown, Richard C. Trembath, Jonathan Wilde, Steve P. Watson, Eamonn R. Maher
Am J Hum Genet. 2006 Jan; 78(1): 160–166. Published online 2005 Nov 28. doi: 10.1086/499338
PMCID:
PMC1380215
AbstractArticlePDF–989K
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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