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Items: 1 to 20 of 31

1.
SPEN is required for Xist upregulation during initiation of X chromosome inactivation
Teresa Robert-Finestra, Beatrice F. Tan, Hegias Mira-Bontenbal, Erika Timmers, Cristina Gontan, Sarra Merzouk, Benedetto Daniele Giaimo, François Dossin, Wilfred F. J. van IJcken, John W. M. Martens, Tilman Borggrefe, Edith Heard, Joost Gribnau
Nat Commun. 2021; 12: 7000. Published online 2021 Dec 1. doi: 10.1038/s41467-021-27294-5
PMCID:
PMC8636516
AbstractArticlePDF–6.5M
2.
TWIST1 and chromatin regulatory proteins interact to guide neural crest cell differentiation
Xiaochen Fan, V Pragathi Masamsetti, Jane QJ Sun, Kasper Engholm-Keller, Pierre Osteil, Joshua Studdert, Mark E Graham, Nicolas Fossat, Patrick PL Tam
eLife. 2021; 10: e62873. Published online 2021 Feb 8. doi: 10.7554/eLife.62873
PMCID:
PMC7968925
AbstractArticlePDF–4.0M
3.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
4.
Elements at the 5′ end of Xist harbor SPEN-independent transcriptional antiterminator activity
Jackson B Trotman, David M Lee, Rachel E Cherney, Susan O Kim, Kaoru Inoue, Megan D Schertzer, Steven R Bischoff, Dale O Cowley, J Mauro Calabrese
Nucleic Acids Res. 2020 Oct 9; 48(18): 10500–10517. Published online 2020 Sep 28. doi: 10.1093/nar/gkaa789
PMCID:
PMC7544216
AbstractArticlePDF–6.0M
5.
Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation
Ava C Carter, Jin Xu, Meagan Y Nakamoto, Yuning Wei, Brian J Zarnegar, Quanming Shi, James P Broughton, Ryan C Ransom, Ankit Salhotra, Surya D Nagaraja, Rui Li, Diana R Dou, Kathryn E Yost, Seung-Woo Cho, Anil Mistry, Michael T Longaker, Paul A Khavari, Robert T Batey, Deborah S Wuttke, Howard Y Chang
eLife. 2020; 9: e54508. Published online 2020 May 7. doi: 10.7554/eLife.54508
PMCID:
PMC7282817
AbstractArticlePDF–2.7M
6.
SPEN integrates transcriptional and epigenetic control of X-inactivation
François Dossin, Inês Pinheiro, Jan J. Żylicz, Julia Roensch, Samuel Collombet, Agnès Le Saux, Tomasz Chelmicki, Mikaël Attia, Varun Kapoor, Ye Zhan, Florent Dingli, Damarys Loew, Thomas Mercher, Job Dekker, Edith Heard
Nature. Author manuscript; available in PMC 2020 Aug 5.
Published in final edited form as: Nature. 2020 Feb; 578(7795): 455–460. Published online 2020 Feb 5. doi: 10.1038/s41586-020-1974-9
PMCID:
PMC7035112
AbstractArticlePDF–3.4M
7.
Structural and Functional Studies of the RBPJ-SHARP Complex Reveal a Conserved Corepressor Binding Site
Zhenyu Yuan, Bradley D. VanderWielen, Benedetto Daniele Giaimo, Leiling Pan, Courtney E. Collins, Aleksandra Turkiewicz, Kerstin Hein, Franz Oswald, Tilman Borggrefe, Rhett A. Kovall
Cell Rep. Author manuscript; available in PMC 2019 Jan 30.
Published in final edited form as: Cell Rep. 2019 Jan 22; 26(4): 845–854.e6. doi: 10.1016/j.celrep.2018.12.097
PMCID:
PMC6352735
AbstractArticlePDF–1.9M
8.
Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells
Sunyuan Zhang, Nicholas A. Williamson, Marie A. Bogoyevitch
Sci Data. 2018; 5: 180262. Published online 2018 Nov 20. doi: 10.1038/sdata.2018.262
PMCID:
PMC6244183
AbstractArticlePDF–753K
9.
Rbpj direct regulation of Atoh7 transcription in the embryonic mouse retina
Joel B. Miesfeld, Myung-soon Moon, Amy N. Riesenberg, Ashley N. Contreras, Rhett A. Kovall, Nadean L. Brown
Sci Rep. 2018; 8: 10195. Published online 2018 Jul 5. doi: 10.1038/s41598-018-28420-y
PMCID:
PMC6033939
AbstractArticlePDF–3.4M
10.
An autonomous metabolic role for Spen
Kelsey E. Hazegh, Travis Nemkov, Angelo D’Alessandro, John D. Diller, Jenifer Monks, James L. McManaman, Kenneth L. Jones, Kirk C. Hansen, Tânia Reis
PLoS Genet. 2017 Jun; 13(6): e1006859. Published online 2017 Jun 22. doi: 10.1371/journal.pgen.1006859
Correction in:
PLoS Genet. 2018 Mar; 14(3): e1007266.
PMCID:
PMC5501677
AbstractArticlePDF–15M
11.
A Pooled shRNA Screen Identifies Rbm15, Spen, and Wtap as Factors Required for Xist RNA-Mediated Silencing
Benoit Moindrot, Andrea Cerase, Heather Coker, Osamu Masui, Anne Grijzenhout, Greta Pintacuda, Lothar Schermelleh, Tatyana B. Nesterova, Neil Brockdorff
Cell Rep. 2015 Jul 28; 12(4): 562–572. Published online 2015 Jul 16. doi: 10.1016/j.celrep.2015.06.053
PMCID:
PMC4534822
AbstractArticlePDF–4.2M
12.
Identification of Spen as a Crucial Factor for Xist Function through Forward Genetic Screening in Haploid Embryonic Stem Cells
Asun Monfort, Giulio Di Minin, Andreas Postlmayr, Remo Freimann, Fabiana Arieti, Stéphane Thore, Anton Wutz
Cell Rep. 2015 Jul 28; 12(4): 554–561. Published online 2015 Jul 16. doi: 10.1016/j.celrep.2015.06.067
PMCID:
PMC4530576
AbstractArticlePDF–2.1M
13.
The Xist lncRNA directly interacts with SHARP to silence transcription through HDAC3
Colleen A. McHugh, Chun-Kan Chen, Amy Chow, Christine F. Surka, Christina Tran, Patrick McDonel, Amy Pandya-Jones, Mario Blanco, Christina Burghard, Annie Moradian, Michael J. Sweredoski, Alexander A. Shishkin, Julia Su, Eric S. Lander, Sonja Hess, Kathrin Plath, Mitchell Guttman
Nature. Author manuscript; available in PMC 2015 Nov 14.
Published in final edited form as: Nature. 2015 May 14; 521(7551): 232–236. Published online 2015 Apr 27. doi: 10.1038/nature14443
PMCID:
PMC4516396
AbstractArticlePDF–4.9M
14.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
15.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
16.
Transcriptional Repression in the Notch Pathway: THERMODYNAMIC CHARACTERIZATION OF CSL-MINT (Msx2-INTERACTING NUCLEAR TARGET PROTEIN) COMPLEXES
Bradley D. VanderWielen, Zhenyu Yuan, David R. Friedmann, Rhett A. Kovall
J Biol Chem. 2011 Apr 29; 286(17): 14892–14902. Published online 2011 Mar 3. doi: 10.1074/jbc.M110.181156
PMCID:
PMC3083192
AbstractArticlePDF–1.6M
17.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
18.
Runx2 Trans-Activation Mediated by the Msx2-Interacting Nuclear Target Requires Homeodomain Interacting Protein Kinase-3
Oscar L. Sierra, Dwight A. Towler
Mol Endocrinol. 2010 Jul; 24(7): 1478–1497. Published online 2010 May 19. doi: 10.1210/me.2010-0029
PMCID:
PMC2903907
AbstractArticle
19.
An atlas of combinatorial transcriptional regulation in mouse and man
The FANTOM consortium and RIKEN Omics Science Center
Cell. Author manuscript; available in PMC 2011 Mar 5.
Published in final edited form as: Cell. 2010 Mar 5; 140(5): 744–752. doi: 10.1016/j.cell.2010.01.044
Correction in:
volume 141 on page 369
PMCID:
PMC2836267
AbstractArticlePDF–2.2M
20.
The contribution of Notch1 to nephron segmentation in the developing kidney is revealed in a sensitized Notch2 background and can be augmented by reducing Mint dosage
Kameswaran Surendran, Scott Boyle, Hila Barak, Mijin Kim, Colin Stromberski, Brent McCright, Raphael Kopan
Dev Biol. Author manuscript; available in PMC 2011 Jan 15.
Published in final edited form as: Dev Biol. 2010 Jan 15; 337(2): 386–395. Published online 2009 Nov 13. doi: 10.1016/j.ydbio.2009.11.017
PMCID:
PMC2812695
AbstractArticlePDF–1.0M

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