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Select item 107659551.

Ketolysis is Required for Proper Development and Function of the Peripheral Nervous System: The Peripheral Nerve Requires Ketolysis

Jonathan Enders, Jarrid Jack, Sarah Thomas, Paige Lynch, Sarah Lasnier, Xin Cao, M Taylor Swanson, Janelle M Ryals, John Thyfault, Patricja Puchalska, Peter Crawford, Douglas E Wright

Exp Neurol. Author manuscript; available in PMC 2024 Jan 4.

Published in final edited form as: Exp Neurol. 2023 Jul; 365: 114428. Published online 2023 Apr 24. doi: 10.1016/j.expneurol.2023.114428

PMCID:: PMC10765955

Abstract Article PDF–2.9M

Select item 105282152.

Ketolysis drives CD8⁺ T cell effector function through effects on histone acetylation

Katarzyna M. Luda, Joseph Longo, Susan M. Kitchen-Goosen, Lauren R. Duimstra, Eric H. Ma, McLane J. Watson, Brandon M. Oswald, Zhen Fu, Zachary Madaj, Ariana Kupai, Bradley M. Dickson, Lisa M. DeCamp, Michael S. Dahabieh, Shelby E. Compton, Robert Teis, Irem Kaymak, Kin H. Lau, Daniel P. Kelly, Patrycja Puchalska, Kelsey S. Williams, Connie M. Krawczyk, Dominique Lévesque, François-Michel Boisvert, Ryan D. Sheldon, Scott B. Rothbart, Peter A. Crawford, Russell G. Jones

Immunity. Author manuscript; available in PMC 2024 Sep 12.

Published in final edited form as: Immunity. 2023 Sep 12; 56(9): 2021–2035.e8. Published online 2023 Jul 28. doi: 10.1016/j.immuni.2023.07.002

PMCID:: PMC10528215

Abstract Article PDF–2.2M

Select item 96038603.

The Deubiquitinating Enzyme USP48 Interacts with the Retinal Degeneration-Associated Proteins UNC119a and ARL3

Laura Sánchez-Bellver, Andrea Férriz-Gordillo, Marc Carrillo-Pz, Laura Rabanal, Francesc R. Garcia-Gonzalo, Gemma Marfany

Int J Mol Sci. 2022 Oct; 23(20): 12527. Published online 2022 Oct 19. doi: 10.3390/ijms232012527

PMCID:: PMC9603860

Abstract Article PDF–3.4M

Select item 95539514.

Neonatal ketone body elevation regulates postnatal heart development by promoting cardiomyocyte mitochondrial maturation and metabolic reprogramming

Danyang Chong, Yayun Gu, Tongyu Zhang, Yu Xu, Dandan Bu, Zhong Chen, Na Xu, Liangkui Li, Xiyu Zhu, Haiquan Wang, Yangqing Li, Feng Zheng, Dongjin Wang, Peng Li, Li Xu, Zhibin Hu, Chaojun Li

Cell Discov. 2022; 8: 106. Published online 2022 Oct 11. doi: 10.1038/s41421-022-00447-6

PMCID:: PMC9553951

Abstract Article PDF–3.8M

Select item 91777975.

Fasting Induces a Highly Resilient Deep Quiescent State in Muscle Stem Cells via Ketone Body Signaling

Daniel I. Benjamin, Pieter Both, Joel S. Benjamin, Christopher W. Nutter, Jenna H. Tan, Jengmin Kang, Leo A. Machado, Julian D. D. Klein, Antoine de Morree, Soochi Kim, Ling Liu, Hunter Dulay, Ludovica Feraboli, Sharon M Louie, Daniel K Nomura, Thomas A. Rando

Cell Metab. Author manuscript; available in PMC 2023 Jun 7.

Published in final edited form as: Cell Metab. 2022 Jun 7; 34(6): 902–918.e6. Published online 2022 May 17. doi: 10.1016/j.cmet.2022.04.012

PMCID:: PMC9177797

Abstract Article PDF–3.0M

Select item 79387706.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 72950337.

Ex vivo Quantitative Proteomic Analysis of Serotonin Transporter Interactome: Network Impact of the SERT Ala56 Coding Variant

Meagan A. Quinlan, Matthew J. Robson, Ran Ye, Kristie L. Rose, Kevin L. Schey, Randy D. Blakely

Front Mol Neurosci. 2020; 13: 89. Published online 2020 Jun 8. doi: 10.3389/fnmol.2020.00089

PMCID:: PMC7295033

Abstract Article PDF–2.7M

Select item 65592438.

Hepatocyte-macrophage acetoacetate shuttle protects against tissue fibrosis

Patrycja Puchalska, Shannon E. Martin, Xiaojing Huang, Justin E. Lengfeld, Bence Daniel, Mark J. Graham, Xianlin Han, Laszlo Nagy, Gary J. Patti, Peter A. Crawford

Cell Metab. Author manuscript; available in PMC 2020 Feb 5.

Published in final edited form as: Cell Metab. 2019 Feb 5; 29(2): 383–398.e7. Published online 2018 Nov 15. doi: 10.1016/j.cmet.2018.10.015

PMCID:: PMC6559243

Abstract Article PDF–2.6M

Select item 62441839.

Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells

Sunyuan Zhang, Nicholas A. Williamson, Marie A. Bogoyevitch

Sci Data. 2018; 5: 180262. Published online 2018 Nov 20. doi: 10.1038/sdata.2018.262

PMCID:: PMC6244183

Abstract Article PDF–753K

Select item 606970510.

RNA binding proteins co-localize with small tau inclusions in tauopathy

Brandon F. Maziuk, Daniel J. Apicco, Anna Lourdes Cruz, Lulu Jiang, Peter E. A. Ash, Edroaldo Lummertz da Rocha, Cheng Zhang, Wai Haung Yu, John Leszyk, Jose F. Abisambra, Hu Li, Benjamin Wolozin

Acta Neuropathol Commun. 2018; 6: 71. Published online 2018 Aug 1. doi: 10.1186/s40478-018-0574-5

PMCID:: PMC6069705

Abstract Article PDF–5.5M

Select item 579902311.

Chemical cross-linking mass spectrometry analysis of protein conformations and supercomplexes in heart tissue

Juan D. Chavez, Chi Fung Lee, Arianne Caudal, Andrew Keller, Rong Tian, James E. Bruce

Cell Syst. Author manuscript; available in PMC 2019 Jan 24.

Published in final edited form as: Cell Syst. 2018 Jan 24; 6(1): 136–141.e5. Published online 2017 Nov 29. doi: 10.1016/j.cels.2017.10.017

PMCID:: PMC5799023

Abstract Article PDF–730K

Select item 579538812.

The interactome of intact mitochondria by cross-linking mass spectrometry provides evidence for coexisting respiratory supercomplexes

Fan Liu, Philip Lössl, Beverley M. Rabbitts, Robert S. Balaban, Albert J. R. Heck

Mol Cell Proteomics. 2018 Feb; 17(2): 216–232. Published online 2017 Dec 8. doi: 10.1074/mcp.RA117.000470

PMCID:: PMC5795388

Abstract Article PDF–4.4M

Select item 553686513.

Distinct roles for the mTOR pathway in postnatal morphogenesis, maturation and function of pancreatic islets

Katie L. Sinagoga, William J. Stone, Jacqueline V. Schiesser, Jamie I. Schweitzer, Leesa Sampson, Yi Zheng, James M. Wells

Development. 2017 Jul 1; 144(13): 2402–2414. doi: 10.1242/dev.146316

PMCID:: PMC5536865

Abstract Article

Select item 535051214.

CLUH regulates mitochondrial metabolism by controlling translation and decay of target mRNAs

Désirée Schatton, David Pla-Martin, Marie-Charlotte Marx, Henriette Hansen, Arnaud Mourier, Ivan Nemazanyy, Alberto Pessia, Peter Zentis, Teresa Corona, Vangelis Kondylis, Esther Barth, Astrid C. Schauss, Vidya Velagapudi, Elena I. Rugarli

J Cell Biol. 2017 Mar 6; 216(3): 675–693. doi: 10.1083/jcb.201607019

PMCID:: PMC5350512

Abstract Article PDF–3.2M

Select item 532103215.

Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry

Devin K. Schweppe, Juan D. Chavez, Chi Fung Lee, Arianne Caudal, Shane E. Kruse, Rudy Stuppard, David J. Marcinek, Gerald S. Shadel, Rong Tian, James E. Bruce

Proc Natl Acad Sci U S A. 2017 Feb 14; 114(7): 1732–1737. Published online 2017 Jan 27. doi: 10.1073/pnas.1617220114

PMCID:: PMC5321032

Abstract Article PDF–1.1M

Select item 420936116.

Cardiomyocyte-specific deficiency of ketone body metabolism promotes accelerated pathological remodeling

Rebecca C. Schugar, Ashley R. Moll, D. André d’Avignon, Carla J. Weinheimer, Attila Kovacs, Peter A. Crawford

Mol Metab. 2014 Oct; 3(7): 754–769. Published online 2014 Aug 13. doi: 10.1016/j.molmet.2014.07.010

PMCID:: PMC4209361

Abstract Article PDF–2.6M

Select item 357241017.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 356650818.

Successful adaptation to ketosis by mice with tissue-specific deficiency of ketone body oxidation

David G. Cotter, Rebecca C. Schugar, Anna E. Wentz, D. André d'Avignon, Peter A. Crawford

Am J Physiol Endocrinol Metab. 2013 Feb 15; 304(4): E363–E374. Published online 2012 Dec 11. doi: 10.1152/ajpendo.00547.2012

PMCID:: PMC3566508

Abstract Article

Select item 317805919.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 304494520.

Obligate Role for Ketone Body Oxidation in Neonatal Metabolic Homeostasis

David G. Cotter, D. André d'Avignon, Anna E. Wentz, Mary L. Weber, Peter A. Crawford

J Biol Chem. 2011 Mar 4; 286(9): 6902–6910. Published online 2011 Jan 5. doi: 10.1074/jbc.M110.192369

PMCID:: PMC3044945

Abstract Article PDF–926K

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