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Select item 40895331.

Preliminary X-ray crystallographic analysis of an engineered glutamyl-tRNA synthetase from Escherichia coli

Nipa Chongdar, Saumya Dasgupta, Ajit Bikram Datta, Gautam Basu

Acta Crystallogr F Struct Biol Commun. 2014 Jul 1; 70(Pt 7): 922–927. Published online 2014 Jun 18. doi: 10.1107/S2053230X14010723

PMCID:: PMC4089533

Abstract Article PDF–1.2M

Select item 28541362.

Architectural Underpinnings of the Genetic Code for Glutamine

Eleonora M. Corigliano, John J. Perona

Biochemistry. Author manuscript; available in PMC 2010 Apr 13.

Published in final edited form as: Biochemistry. 2009 Feb 3; 48(4): 676–687. doi: 10.1021/bi801552y

PMCID:: PMC2854136

Abstract Article PDF–1.0M

Select item 26621553.

Promoting the Formation of an Active Synthetase/tRNA Complex by a Nonspecific tRNA-binding Domain

Chia-Pei Chang, Grace Lin, Shun-Jia Chen, Wen-Chih Chiu, Wen-Heng Chen, Chien-Chia Wang

J Biol Chem. 2008 Nov 7; 283(45): 30699–30706. doi: 10.1074/jbc.M805339200

PMCID:: PMC2662155

Abstract Article PDF–925K

Select item 25163784.

Active site assembly in glutaminyl-tRNA synthetase by tRNA-mediated induced fit

Nathan T. Uter, John J. Perona

Biochemistry. Author manuscript; available in PMC 2008 Aug 14.

Published in final edited form as: Biochemistry. 2006 Jun 6; 45(22): 6858–6865. doi: 10.1021/bi052606b

PMCID:: PMC2516378

Abstract Article PDF–1.9M

Select item 23966765.

A rationally engineered misacylating aminoacyl-tRNA synthetase

Timothy L. Bullock, Annia Rodríguez-Hernández, Eleonora M. Corigliano, John J. Perona

Proc Natl Acad Sci U S A. 2008 May 27; 105(21): 7428–7433. Published online 2008 May 13. doi: 10.1073/pnas.0711812105

PMCID:: PMC2396676

Abstract Article PDF–634K

Select item 22921776.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 16978567.

Mechanism of the Difference in the Binding Affinity of E. coli tRNA^Gln to Glutaminyl-tRNA Synthetase Caused by Noninterface Nucleotides in Variable Loop

Satoshi Yamasaki, Shugo Nakamura, Tohru Terada, Kentaro Shimizu

Biophys J. 2007 Jan 1; 92(1): 192–200. Published online 2006 Oct 6. doi: 10.1529/biophysj.106.093351

PMCID:: PMC1697856

Abstract Article PDF–1.0M

Select item 16814828.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 16814819.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 152207410.

Regulon and promoter analysis of the E. coli heat-shock factor, σ³², reveals a multifaceted cellular response to heat stress

Gen Nonaka, Matthew Blankschien, Christophe Herman, Carol A. Gross, Virgil A. Rhodius

Genes Dev. 2006 Jul 1; 20(13): 1776–1789. doi: 10.1101/gad.1428206

PMCID:: PMC1522074

Abstract Article PDF–548K

Select item 148322511.

A base pair at the bottom of the anticodon stem is reciprocally preferred for discrimination of cognate tRNAs by Escherichia coli lysyl- and glutaminyl-tRNA synthetases

Jun-ichi Fukunaga, Satoshi Ohno, Kazuya Nishikawa, Takashi Yokogawa

Nucleic Acids Res. 2006; 34(10): 3181–3188. Published online 2006 Jun 27. doi: 10.1093/nar/gkl414

PMCID:: PMC1483225

Abstract Article PDF–388K

Select item 137057012.

Structure–function analysis of tRNA^Gln in an Escherichia coli knockout strain

WILLIAM H. MCCLAIN, KAY GABRIEL, DENNIS LEE, SHAREE OTTEN

RNA. 2004 May; 10(5): 795–804. doi: 10.1261/rna.5271404

PMCID:: PMC1370570

Abstract Article PDF–231K

Select item 132520013.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405