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Items: 16

1.
Mouse GTSF1 is an essential factor for secondary piRNA biogenesis
Takuji Yoshimura, Toshiaki Watanabe, Satomi Kuramochi‐Miyagawa, Noriaki Takemoto, Yusuke Shiromoto, Akihiko Kudo, Masami Kanai‐Azuma, Fumi Tashiro, Satsuki Miyazaki, Ami Katanaya, Shinichiro Chuma, Jun‐ichi Miyazaki
EMBO Rep. 2018 Apr; 19(4): e42054. Published online 2018 Feb 7. doi: 10.15252/embr.201642054
PMCID:
PMC5891400
AbstractArticlePDF–1.8M
2.
A CRISPR-based screen for Hedgehog signaling provides insights into ciliary function and ciliopathies
David K. Breslow, Sascha Hoogendoorn, Adam R. Kopp, David W. Morgens, Brandon K. Vu, Margaret C. Kennedy, Kyuho Han, Amy Li, Gaelen T. Hess, Michael C. Bassik, James K. Chen, Maxence V. Nachury
Nat Genet. Author manuscript; available in PMC 2018 Aug 19.
Published in final edited form as: Nat Genet. 2018 Mar; 50(3): 460–471. Published online 2018 Feb 19. doi: 10.1038/s41588-018-0054-7
PMCID:
PMC5862771
AbstractArticlePDF–2.5M
3.
Distinct Roles of RNA Helicases MVH and TDRD9 in PIWI Slicing-Triggered Mammalian piRNA Biogenesis and Function
Joanna M. Wenda, David Homolka, Zhaolin Yang, Pietro Spinelli, Ravi Sachidanandam, Radha Raman Pandey, Ramesh S. Pillai
Dev Cell. 2017 Jun 19; 41(6): 623–637.e9. doi: 10.1016/j.devcel.2017.05.021
PMCID:
PMC5481186
AbstractArticle
4.
Dazl is a target RNA suppressed by mammalian NANOS2 in sexually differentiating male germ cells
Yuzuru Kato, Takeo Katsuki, Hiroki Kokubo, Aki Masuda, Yumiko Saga
Nat Commun. 2016; 7: 11272. Published online 2016 Apr 13. doi: 10.1038/ncomms11272
PMCID:
PMC4833867
AbstractArticlePDF–2.2M
5.
The nuage mediates retrotransposon silencing in mouse primordial ovarian follicles
Ai Khim Lim, Chanchao Lorthongpanich, Ting Gang Chew, Chin Wee Godwin Tan, Yan Ting Shue, Sathish Balu, Natalia Gounko, Satomi Kuramochi-Miyagawa, Martin M. Matzuk, Shinichiro Chuma, Daniel M. Messerschmidt, Davor Solter, Barbara B. Knowles
Development. 2013 Sep 15; 140(18): 3819–3825. doi: 10.1242/dev.099184
PMCID:
PMC4067262
AbstractArticle
6.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
7.
TDRD5 is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis in mice
Yukihiro Yabuta, Hiroshi Ohta, Takaya Abe, Kazuki Kurimoto, Shinichiro Chuma, Mitinori Saitou
J Cell Biol. 2011 Mar 7; 192(5): 781–795. doi: 10.1083/jcb.201009043
PMCID:
PMC3051809
AbstractArticlePDF–4.0M
8.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
9.
MVH in piRNA processing and gene silencing of retrotransposons
Satomi Kuramochi-Miyagawa, Toshiaki Watanabe, Kengo Gotoh, Kana Takamatsu, Shinichiro Chuma, Kanako Kojima-Kita, Yusuke Shiromoto, Noriko Asada, Atsushi Toyoda, Asao Fujiyama, Yasushi Totoki, Tatsuhiro Shibata, Tohru Kimura, Norio Nakatsuji, Toshiaki Noce, Hiroyuki Sasaki, Toru Nakano
Genes Dev. 2010 May 1; 24(9): 887–892. doi: 10.1101/gad.1902110
PMCID:
PMC2861188
AbstractArticlePDF–512K
10.
Cytoplasmic Compartmentalization of the Fetal piRNA Pathway in Mice
Alexei A. Aravin, Godfried W. van der Heijden, Julio Castañeda, Vasily V. Vagin, Gregory J. Hannon, Alex Bortvin
PLoS Genet. 2009 Dec; 5(12): e1000764. Published online 2009 Dec 11. doi: 10.1371/journal.pgen.1000764
PMCID:
PMC2785470
AbstractArticlePDF–5.5M
11.
Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members
Vasily V. Vagin, James Wohlschlegel, Jun Qu, Zophonias Jonsson, Xinhua Huang, Shinichiro Chuma, Angelique Girard, Ravi Sachidanandam, Gregory J. Hannon, Alexei A. Aravin
Genes Dev. 2009 Aug 1; 23(15): 1749–1762. doi: 10.1101/gad.1814809
PMCID:
PMC2720255
AbstractArticlePDF–1.7M
12.
Genomewide Discovery and Classification of Candidate Ovarian Fertility Genes in the Mouse
Teresa D. Gallardo, George B. John, Lane Shirley, Cristina M. Contreras, Esra A. Akbay, J. Marshall Haynie, Samuel E. Ward, Meredith J. Shidler, Diego H. Castrillon
Genetics. 2007 Sep; 177(1): 179–194. doi: 10.1534/genetics.107.074823
PMCID:
PMC2013718
AbstractArticlePDF–1.8M
13.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
14.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
15.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K
16.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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