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Items: 1 to 20 of 48

1.
RNase H is an exo- and endoribonuclease with asymmetric directionality, depending on the binding mode to the structural variants of RNA:DNA hybrids
Hyunjee Lee, HyeokJin Cho, Jooyoung Kim, Sua Lee, Jungmin Yoo, Daeho Park, Gwangrog Lee
Nucleic Acids Res. 2022 Feb 28; 50(4): 1801–1814. Published online 2021 Nov 12. doi: 10.1093/nar/gkab1064
PMCID:
PMC8886854
AbstractArticlePDF–1.6M
2.
DNA Breaks-Mediated Fitness Cost Reveals RNase HI as a New Target for Selectively Eliminating Antibiotic-Resistant Bacteria
Roberto Balbontín, Nelson Frazão, Isabel Gordo
Mol Biol Evol. 2021 Aug; 38(8): 3220–3234. Published online 2021 Apr 8. doi: 10.1093/molbev/msab093
PMCID:
PMC8321526
AbstractArticlePDF–888K
3.
Interaction with single-stranded DNA-binding protein localizes ribonuclease HI to DNA replication forks and facilitates R-loop removal
Christine Wolak, Hui Jun Ma, Nicolas Soubry, Steven J. Sandler, Rodrigo Reyes-Lamothe, James L. Keck
Mol Microbiol. Author manuscript; available in PMC 2021 Sep 1.
Published in final edited form as: Mol Microbiol. 2020 Sep; 114(3): 495–509. Published online 2020 Jun 4. doi: 10.1111/mmi.14529
PMCID:
PMC7934204
AbstractArticlePDF–932K
4.
RNase H sequence preferences influence antisense oligonucleotide efficiency
Łukasz J. Kiełpiński, Peter H. Hagedorn, Morten Lindow, Jeppe Vinther
Nucleic Acids Res. 2017 Dec 15; 45(22): 12932–12944. Published online 2017 Nov 8. doi: 10.1093/nar/gkx1073
Expression of Concern in:
Nucleic Acids Res. 2019 Mar 18; 47(5): 2701.
PMCID:
PMC5728404
AbstractArticlePDF–1.4M
5.
RNase HII saves rnhA mutant Escherichia coli from R-loop-associated chromosomal fragmentation
Elena A. Kouzminova, Farid F. Kadyrov, Andrei Kuzminov
J Mol Biol. Author manuscript; available in PMC 2018 Sep 15.
Published in final edited form as: J Mol Biol. 2017 Sep 15; 429(19): 2873–2894. Published online 2017 Aug 15. doi: 10.1016/j.jmb.2017.08.004
PMCID:
PMC5610948
AbstractArticlePDF–1008K
6.
RnlB Antitoxin of the Escherichia coli RnlA-RnlB Toxin–Antitoxin Module Requires RNase HI for Inhibition of RnlA Toxin Activity
Kenta Naka, Dan Qi, Tetsuro Yonesaki, Yuichi Otsuka
Toxins (Basel) 2017 Jan; 9(1): 29. Published online 2017 Jan 11. doi: 10.3390/toxins9010029
PMCID:
PMC5308261
AbstractArticlePDF–2.1M
7.
Interaction with Single-stranded DNA-binding Protein Stimulates Escherichia coli Ribonuclease HI Enzymatic Activity
Christine Petzold, Aimee H. Marceau, Katherine H. Miller, Susan Marqusee, James L. Keck
J Biol Chem. 2015 Jun 5; 290(23): 14626–14636. Published online 2015 Apr 22. doi: 10.1074/jbc.M115.655134
PMCID:
PMC4505529
AbstractArticlePDF–1.5M
8.
A single mutation at residue 25 populates the folding intermediate of E. coli RNase H and reveals a highly dynamic partially-folded ensemble
Katelyn B. Connell, Geoffrey A. Horner, Susan Marqusee
J Mol Biol. Author manuscript; available in PMC 2010 Aug 14.
Published in final edited form as: J Mol Biol. 2009 Aug 14; 391(2): 461–470. Published online 2009 Jun 6. doi: 10.1016/j.jmb.2009.05.084
PMCID:
PMC2881687
AbstractArticlePDF–1.7M
9.
Depletion of RNase HI activity in Escherichia coli lacking DNA topoisomerase I leads to defects in DNA supercoiling and segregation
Valentine Usongo, Flora Nolent, Patrick Sanscartier, Cynthia Tanguay, Sonia Broccoli, Imad Baaklini, Karl Drlica, Marc Drolet
Mol Microbiol. Author manuscript; available in PMC 2010 May 25.
Published in final edited form as: Mol Microbiol. 2008 Aug; 69(4): 968–981. Published online 2008 Jun 28. doi: 10.1111/j.1365-2958.2008.06334.x
PMCID:
PMC2875999
AbstractArticlePDF–2.6M
10.
The folding trajectory of RNase H is dominated by its topology and not local stability: a protein engineering study of variants that fold via two-state and three-state mechanism
Katelyn B. Connell, Erik J. Miller, Susan Marqusee
J Mol Biol. Author manuscript; available in PMC 2010 Aug 14.
Published in final edited form as: J Mol Biol. 2009 Aug 14; 391(2): 450–460. Published online 2009 Jun 6. doi: 10.1016/j.jmb.2009.05.085
PMCID:
PMC2865250
AbstractArticlePDF–2.3M
11.
Improvement of RNA secondary structure prediction using RNase H cleavage and randomized oligonucleotides
Andrew D. Kauffmann, Ryan J. Campagna, Chantal B. Bartels, Jessica L. Childs-Disney
Nucleic Acids Res. 2009 Oct; 37(18): e121. Published online 2009 Jul 13. doi: 10.1093/nar/gkp587
PMCID:
PMC2764423
AbstractArticlePDF–2.3M
12.
Investigating protein unfolding kinetics by pulse proteolysis
Yu-Ran Na, Chiwook Park
Protein Sci. 2009 Feb; 18(2): 268–276. Published online 2008 Dec 2. doi: 10.1002/pro.29
PMCID:
PMC2708051
AbstractArticlePDF–303K
13.
Protein Side-Chain Dynamics and Residual Conformational Entropy
Nikola Trbovic, Jae-Hyun Cho, Robert Abel, Richard A. Friesner, Mark Rance, Arthur G. Palmer, III
J Am Chem Soc. Author manuscript; available in PMC 2010 Jan 21.
Published in final edited form as: J Am Chem Soc. 2009 Jan 21; 131(2): 615–622. doi: 10.1021/ja806475k
PMCID:
PMC2683258
AbstractArticlePDF–1.7M
14.
Expansion of a chromosomal repeat in Escherichia coli: roles of replication, repair, and recombination functions
Anthony R Poteete
BMC Mol Biol. 2009; 10: 14. Published online 2009 Feb 23. doi: 10.1186/1471-2199-10-14
PMCID:
PMC2656507
AbstractArticlePDF–698K
15.
Hypernegative Supercoiling Inhibits Growth by Causing RNA Degradation
Imad Baaklini, Valentine Usongo, Flora Nolent, Patrick Sanscartier, Chadi Hraiky, Karl Drlica, Marc Drolet
J Bacteriol. 2008 Nov; 190(22): 7346–7356. Published online 2008 Sep 12. doi: 10.1128/JB.00680-08
PMCID:
PMC2576660
AbstractArticlePDF–1.0M
16.
Crystallization and preliminary X-ray analysis of Escherichia coli RNase HI–dsRNA complexes
Lioudmila V. Loukachevitch, Martin Egli
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Feb 1; 63(Pt 2): 84–88. Published online 2007 Jan 17. doi: 10.1107/S1744309106055461
PMCID:
PMC2330121
AbstractArticlePDF–543K
17.
An inserted Gly residue fine tunes dynamics between mesophilic and thermophilic ribonucleases H
Joel A. Butterwick, Arthur G. Palmer, III
Protein Sci. 2006 Dec; 15(12): 2697–2707. doi: 10.1110/ps.062398606
PMCID:
PMC2242442
AbstractArticlePDF–686K
18.
Construction of an in vitro bistable circuit from synthetic transcriptional switches
Jongmin Kim, Kristin S White, Erik Winfree
Mol Syst Biol. 2006; 2: 68. Published online 2006 Dec 12. doi: 10.1038/msb4100099
PMCID:
PMC1762086
AbstractArticlePDF–586K
19.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
20.
Requirements for Replication Restart Proteins During Constitutive Stable DNA Replication in Escherichia coli K-12
Steven J. Sandler
Genetics. 2005 Apr; 169(4): 1799–1806. doi: 10.1534/genetics.104.036962
PMCID:
PMC1449598
AbstractArticlePDF–119K

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