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Select item 78760451.

Nascent RNA sequencing identifies a widespread sigma70-dependent pausing regulated by Gre factors in bacteria

Zhe Sun, Alexander V. Yakhnin, Peter C. FitzGerald, Carl E. Mclntosh, Mikhail Kashlev

Nat Commun. 2021; 12: 906. Published online 2021 Feb 10. doi: 10.1038/s41467-021-21150-2

PMCID:: PMC7876045

Abstract Article PDF–5.7M

Select item 75275592.

Mutational analysis of Escherichia coli GreA protein reveals new functional activity independent of antipause and lethal when overexpressed

Llorenç Fernández-Coll, Katarzyna Potrykus, Michael Cashel, Carlos Balsalobre

Sci Rep. 2020; 10: 16074. Published online 2020 Sep 30. doi: 10.1038/s41598-020-73069-1

PMCID:: PMC7527559

Abstract Article PDF–1.7M

Select item 68298803.

Autoregulation of greA Expression Relies on GraL Rather than on greA Promoter Region

Maciej Dylewski, Llorenç Fernández-Coll, Bożena Bruhn-Olszewska, Carlos Balsalobre, Katarzyna Potrykus

Int J Mol Sci. 2019 Oct; 20(20): 5224. Published online 2019 Oct 22. doi: 10.3390/ijms20205224

PMCID:: PMC6829880

Abstract Article PDF–2.6M

Select item 54194684.

A Cre Transcription Fidelity Reporter Identifies GreA as a Major RNA Proofreading Factor in Escherichia coli

Mikhail G. Bubunenko, Carolyn B. Court, Alison J. Rattray, Deanna R. Gotte, Maria L. Kireeva, Jorge A. Irizarry-Caro, Xintian Li, Ding J. Jin, Donald L. Court, Jeffrey N. Strathern, Mikhail Kashlev

Genetics. 2017 May; 206(1): 179–187. Published online 2017 Mar 23. doi: 10.1534/genetics.116.198960

PMCID:: PMC5419468

Abstract Article PDF–798K

Select item 30788545.

Recombination Phenotypes of Escherichia coli greA Mutants

Anthony R Poteete

BMC Mol Biol. 2011; 12: 12. Published online 2011 Mar 31. doi: 10.1186/1471-2199-12-12

PMCID:: PMC3078854

Abstract Article PDF–382K

Select item 28365766.

Imprecise transcription termination within Escherichia coli greA leader gives rise to an array of short transcripts, GraL

Katarzyna Potrykus, Helen Murphy, Xiongfong Chen, Jonathan A. Epstein, Michael Cashel

Nucleic Acids Res. 2010 Mar; 38(5): 1636–1651. Published online 2009 Dec 14. doi: 10.1093/nar/gkp1150

PMCID:: PMC2836576

Abstract Article PDF–1.8M

Select item 28190857.

Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation

Asma Hatoum, Jeffrey Roberts

Mol Microbiol. Author manuscript; available in PMC 2010 Feb 10.

Published in final edited form as: Mol Microbiol. 2008 Apr; 68(1): 17–28. doi: 10.1111/j.1365-2958.2008.06138.x

PMCID:: PMC2819085

Abstract Article PDF–2.9M

Select item 27910018.

Early Transcriptional Arrest at Escherichia coli rplN and ompX Promoters

Ekaterina Stepanova, Minshi Wang, Konstantin Severinov, Sergei Borukhov

J Biol Chem. 2009 Dec 18; 284(51): 35702–35713. Published online 2009 Oct 23. doi: 10.1074/jbc.M109.053983

PMCID:: PMC2791001

Abstract Article PDF–4.0M

Select item 27187129.

Direct Detection of Abortive RNA Transcripts in Vivo

Seth R. Goldman, Richard H. Ebright, Bryce E. Nickels

Science. Author manuscript; available in PMC 2009 Nov 15.

Published in final edited form as: Science. 2009 May 15; 324(5929): 927–928. doi: 10.1126/science.1169237

PMCID:: PMC2718712

Abstract Article PDF–517K

Select item 265239310.

Transcriptional Infidelity Promotes Heritable Phenotypic Change in a Bistable Gene Network

Alasdair J. E Gordon, Jennifer A Halliday, Matthew D Blankschien, Philip A Burns, Fumio Yatagai, Christophe Herman

PLoS Biol. 2009 Feb; 7(2): e1000044. Published online 2009 Feb 24. doi: 10.1371/journal.pbio.1000044

PMCID:: PMC2652393

Abstract Article PDF–225K

Select item 229217711.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 216860312.

Analysis of Promoter Targets for Escherichia coli Transcription Elongation Factor GreA In Vivo and In Vitro

Ekaterina Stepanova, Jookyung Lee, Maria Ozerova, Ekaterina Semenova, Kirill Datsenko, Barry L. Wanner, Konstantin Severinov, Sergei Borukhov

J Bacteriol. 2007 Dec; 189(24): 8772–8785. Published online 2007 Aug 31. doi: 10.1128/JB.00911-07

PMCID:: PMC2168603

Abstract Article PDF–429K

Select item 216859613.

Gene-Specific Regulation by a Transcript Cleavage Factor: Facilitating Promoter Escape

Ann Hochschild

J Bacteriol. 2007 Dec; 189(24): 8769–8771. Published online 2007 Oct 19. doi: 10.1128/JB.01611-07

PMCID:: PMC2168596

Article PDF–47K

Select item 183992814.

Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase

Steven T. Rutherford, Justin J. Lemke, Catherine E. Vrentas, Tamas Gaal, Wilma Ross, Richard L. Gourse

J Mol Biol. Author manuscript; available in PMC 2007 Mar 30.

Published in final edited form as: J Mol Biol. 2007 Mar 2; 366(4): 1243–1257. Published online 2006 Dec 12. doi: 10.1016/j.jmb.2006.12.013

PMCID:: PMC1839928

Abstract Article PDF–1.0M

Select item 168148115.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 141358716.

A pathway branching in transcription initiation in Escherichia coli

Motoki Susa, Tomoko Kubori, Nobuo Shimamoto

Mol Microbiol. 2006 Mar; 59(6): 1807–1817. Published online 2006 Jan 30. doi: 10.1111/j.1365-2958.2006.05058.x

PMCID:: PMC1413587

Abstract Article PDF–394K

Select item 132520017.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405