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Select item 102013691.

An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening

Manli Xiang, Kaijiang Xia, Bingyi Chen, Zhiteng Luo, Ying Yu, Lili Jiang, Huihao Zhou

Nucleic Acids Res. 2023 May 22; 51(9): 4637–4649. Published online 2023 Apr 18. doi: 10.1093/nar/gkad278

PMCID:: PMC10201369

Abstract Article PDF–4.9M

Select item 57573752.

Multiple helical conformations of the helix-turn-helix region revealed by NOE-restrained MD simulations of tryptophan aporepressor, TrpR

Balasubramanian Harish, G.V.T. Swapna, Gregory J. Kornhaber, Gaetano T. Montelione, Jannette Carey

Proteins. Author manuscript; available in PMC 2018 Apr 1.

Published in final edited form as: Proteins. 2017 Apr; 85(4): 731–740. Published online 2017 Feb 22. doi: 10.1002/prot.25252

PMCID:: PMC5757375

Abstract Article PDF–634K

Select item 41238553.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 32286044.

E. coli trp repressor forms a domain-swapped array in aqueous alcohol

Catherine L. Lawson, Brian Benoff, Tatyana Berger, Helen M. Berman, Jannette Carey

Structure. Author manuscript; available in PMC 2011 Dec 1.

Published in final edited form as: Structure. 2004 Jun; 12(6): 1099–1108. doi: 10.1016/j.str.2004.03.019

PMCID:: PMC3228604

Abstract Article PDF–1.6M

Select item 31134495.

Internal Dynamics of the Tryptophan Repressor (TrpR) and Two Functionally Distinct TrpR Variants, L75F-TrpR and A77V-TrpR, in their L-Trp bound forms

Brian P. Tripet, Anupam Goel, Valérie Copié

Biochemistry. Author manuscript; available in PMC 2012 Jun 14.

Published in final edited form as: Biochemistry. 2011 Jun 14; 50(23): 5140–5153. Published online 2011 May 20. doi: 10.1021/bi200389k

PMCID:: PMC3113449

Abstract Article PDF–1.1M

Select item 24473676.

Functional Genomics Via Metabolic Footprinting: Monitoring Metabolite Secretion by Escherichia Coli Tryptophan Metabolism Mutants Using FT–IR and Direct Injection Electrospray Mass Spectrometry

Naheed N. Kaderbhai, David I. Broadhurst, David I. Ellis, Royston Goodacre, Douglas B. Kell

Comp Funct Genomics. 2003 Jul; 4(4): 376–391. doi: 10.1002/cfg.302

PMCID:: PMC2447367

Summary PDF–492K

Select item 21434327.

Flexibility of DNA binding domain of trp repressor required for recognition of different operator sequences.

M. R. Gryk, O. Jardetzky, L. S. Klig, C. Yanofsky

Protein Sci. 1996 Jun; 5(6): 1195–1197. doi: 10.1002/pro.5560050624

PMCID:: PMC2143432

Summary PDF–276K

Select item 18662988.

The Folding Energy Landscape of the Dimerization Domain of E. coli Trp Repressor: A Joint Experimental and Theoretical Investigation

B. Robert Simler, Yaakov Levy, José N. Onuchic, C. Robert Matthews

J Mol Biol. Author manuscript; available in PMC 2007 Oct 13.

Published in final edited form as: J Mol Biol. 2006 Oct 13; 363(1): 262–278. Published online 2006 Aug 2. doi: 10.1016/j.jmb.2006.07.080

PMCID:: PMC1866298

Abstract Article PDF–1.9M

Select item 16814819.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 157875810.

Multiple feedback loop design in the tryptophan regulatory network of Escherichia coli suggests a paradigm for robust regulation of processes in series

Sharad Bhartiya, Nikhil Chaudhary, K.V Venkatesh, Francis J Doyle, III

J R Soc Interface. 2006 Jun 22; 3(8): 383–391. Published online 2005 Nov 29. doi: 10.1098/rsif.2005.0103

PMCID:: PMC1578758

Abstract Article PDF–320K

Select item 147405911.

Displacement of a DNA binding protein by Dda helicase

Alicia K. Byrd, Kevin D. Raney

Nucleic Acids Res. 2006; 34(10): 3020–3029. Published online 2006 May 31. doi: 10.1093/nar/gkl369

PMCID:: PMC1474059

Abstract Article PDF–305K

Select item 132520012.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405