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Items: 20

1.
Photoaffinity Capture Compounds to Profile the Magic Spot Nucleotide Interactomes
Dr. Thomas M. Haas, Dr. Benoît‐Joseph Laventie, Dr. Simon Lagies, Caroline Harter, Isabel Prucker, Dr. Danilo Ritz, Dr. Raspudin Saleem‐Batcha, Dr. Danye Qiu, Dr. Wolfgang Hüttel, Prof. Dr. Jennifer Andexer, Prof. Dr. Bernd Kammerer, Prof. Dr. Urs Jenal, Prof. Dr. Henning J. Jessen
Angew Chem Int Ed Engl. 2022 May 23; 61(22): e202201731. Published online 2022 Mar 30. doi: 10.1002/anie.202201731
PMCID:
PMC9310846
AbstractArticlePDF–10M
2.
Stresses that raise Np4A levels induce protective nucleoside tetraphosphate capping of bacterial RNA
Daniel J. Luciano, Rose Levenson-Palmer, Joel G. Belasco
Mol Cell. Author manuscript; available in PMC 2020 Sep 5.
Published in final edited form as: Mol Cell. 2019 Sep 5; 75(5): 957–966.e8. Published online 2019 Jun 6. doi: 10.1016/j.molcel.2019.05.031
PMCID:
PMC6731127
AbstractArticlePDF–995K
3.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
4.
Role of Global Regulators and Nucleotide Metabolism in Antibiotic Tolerance in Escherichia coli
Sonja Hansen, Kim Lewis, Marin Vulić
Antimicrob Agents Chemother. 2008 Aug; 52(8): 2718–2726. Published online 2008 Jun 2. doi: 10.1128/AAC.00144-08
PMCID:
PMC2493092
AbstractArticlePDF–398K
5.
Preparation, crystallization and preliminary X-ray crystallographic studies of diadenosine tetraphosphate hydrolase from Shigella flexneri 2a
Wenxin Hu, Qihai Wang, Ruchang Bi
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Dec 1; 61(Pt 12): 1078–1080. Published online 2005 Nov 24. doi: 10.1107/S174430910503722X
PMCID:
PMC1978153
AbstractArticlePDF–132K
6.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
7.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
8.
Studies on some specific Ap4A-degrading enzymes with the use of various methylene analogues of P1P4-bis-(5',5'''-adenosyl) tetraphosphate.
A Guranowski, E Starzyńska, G E Taylor, G M Blackburn
Biochem J. 1989 Aug 15; 262(1): 241–244. doi: 10.1042/bj2620241
PMCID:
PMC1133253
SummaryPage BrowsePDF–771K
9.
AppppA binds to several proteins in Escherichia coli, including the heat shock and oxidative stress proteins DnaK, GroEL, E89, C45 and C40.
D B Johnstone, S B Farr
EMBO J. 1991 Dec; 10(12): 3897–3904. doi: 10.1002/j.1460-2075.1991.tb04959.x
PMCID:
PMC453127
SummaryPage BrowsePDF–2.1M
10.
P alpha-chiral phosphorothioate analogues of bis(5'-adenosyl)tetraphosphate (Ap4A); their enzymatic synthesis and degradation.
D Lazewska, A Guranowski
Nucleic Acids Res. 1990 Oct 25; 18(20): 6083–6088. doi: 10.1093/nar/18.20.6083
PMCID:
PMC332409
SummaryPage BrowsePDF–1.0M
11.
Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region.
T Yura, H Mori, H Nagai, T Nagata, A Ishihama, N Fujita, K Isono, K Mizobuchi, A Nakata
Nucleic Acids Res. 1992 Jul 11; 20(13): 3305–3308. doi: 10.1093/nar/20.13.3305
PMCID:
PMC312481
SummaryPage BrowsePDF–957K
12.
An apaH mutation causes AppppA to accumulate and affects motility and catabolite repression in Escherichia coli.
S B Farr, D N Arnosti, M J Chamberlin, B N Ames
Proc Natl Acad Sci U S A. 1989 Jul; 86(13): 5010–5014. doi: 10.1073/pnas.86.13.5010
PMCID:
PMC297546
SummaryPage BrowsePDF–1.6M
13.
Molecular cloning of the Escherichia coli gene for diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase.
Y Mechulam, M Fromant, P Mellot, P Plateau, S Blanchin-Roland, G Fayat, S Blanquet
J Bacteriol. 1985 Oct; 164(1): 63–69. doi: 10.1128/jb.164.1.63-69.1985
PMCID:
PMC214211
SummaryPage BrowsePDF–1.2M
14.
surA, an Escherichia coli gene essential for survival in stationary phase.
A Tormo, M Almirón, R Kolter
J Bacteriol. 1990 Aug; 172(8): 4339–4347. doi: 10.1128/jb.172.8.4339-4347.1990
PMCID:
PMC213259
SummaryPage BrowsePDF–1.6M
15.
Heat shock and hydrogen peroxide responses of Escherichia coli are not changed by dinucleoside tetraphosphate hydrolase overproduction.
P Plateau, M Fromant, S Blanquet
J Bacteriol. 1987 Aug; 169(8): 3817–3820. doi: 10.1128/jb.169.8.3817-3820.1987
PMCID:
PMC212472
SummaryPage BrowsePDF–1.5M
16.
Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH operon of Escherichia coli K-12.
B B Roa, D M Connolly, M E Winkler
J Bacteriol. 1989 Sep; 171(9): 4767–4777. doi: 10.1128/jb.171.9.4767-4777.1989
PMCID:
PMC210278
SummaryPage BrowsePDF–2.3M
17.
Cloning and nucleotide sequence of a negative regulator gene for Klebsiella aerogenes arylsulfatase synthesis and identification of the gene as folA.
H Azakami, H Sugino, Y Murooka
J Bacteriol. 1992 Apr; 174(7): 2344–2351. doi: 10.1128/jb.174.7.2344-2351.1992
PMCID:
PMC205857
SummaryPage BrowsePDF–1.4M
18.
AppppA-binding protein E89 is the Escherichia coli heat shock protein ClpB.
E K Fuge, S B Farr
J Bacteriol. 1993 Apr; 175(8): 2321–2326. doi: 10.1128/jb.175.8.2321-2326.1993
PMCID:
PMC204520
SummaryPage BrowsePDF–1.6M
19.
Phosphoesterase domains associated with DNA polymerases of diverse origins.
L Aravind, E V Koonin
Nucleic Acids Res. 1998 Aug 15; 26(16): 3746–3752. doi: 10.1093/nar/26.16.3746
PMCID:
PMC147763
SummaryPDF–2.5M
20.
Positive Growth Rate-Dependent Regulation of the pdxA, ksgA, and pdxB Genes of Escherichia coli K-12
Andrew J. Pease, Benjamin R. Roa, Wen Luo, Malcolm E. Winkler
J Bacteriol. 2002 Mar; 184(5): 1359–1369. doi: 10.1128/JB.184.5.1359-1369.2002
PMCID:
PMC134838
AbstractArticlePDF–667K

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