PMC Links for GEO Profiles (Select 116096238) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 36702127.

The bacterial DnaC helicase loader is a DnaB ring breaker

Ernesto Arias-Palomo, Valerie L. O’Shea, Iris V. Hood, James M. Berger

Cell. Author manuscript; available in PMC 2014 Apr 11.

Published in final edited form as: Cell. 2013 Apr 11; 153(2): 438–448. Published online 2013 Apr 4. doi: 10.1016/j.cell.2013.03.006

PMCID:: PMC3670212

Abstract Article PDF–5.1M

Select item 30721508.

Interactions of the Escherichia coli DnaB–DnaC Protein Complex with Nucleotide Cofactors. 1. Allosteric Conformational Transitions of the Complex

Anasuya Roychowdhury, Michal R. Szymanski, Maria J. Jezewska, Wlodzimierz Bujalowski

Biochemistry. Author manuscript; available in PMC 2011 Apr 7.

Published in final edited form as: Biochemistry. 2009 Jul 28; 48(29): 6712–6729. doi: 10.1021/bi900050x

PMCID:: PMC3072150

Abstract Article PDF–2.0M

Select item 30636089.

Escherichia coli DnaB Helicase–DnaC Protein Complex: Allosteric Effects of the Nucleotides on the Nucleic Acid Binding and the Kinetic Mechanism of NTP Hydrolysis. 3

Anasuya Roychowdhury, Michal R. Szymanski, Maria J. Jezewska, Wlodzimierz Bujalowski

Biochemistry. Author manuscript; available in PMC 2011 Mar 24.

Published in final edited form as: Biochemistry. 2009 Jul 28; 48(29): 6747–6763. doi: 10.1021/bi9000535

PMCID:: PMC3063608

Abstract Article PDF–955K

Select item 297867010.

Are minichromosomes valid model systems for DNA replication control? Lessons learned from Escherichia coli

Tsuneaki Asai, David B. Bates, Erik Boye, Tokio Kogoma

Mol Microbiol. Author manuscript; available in PMC 2010 Nov 11.

Published in final edited form as: Mol Microbiol. 1998 Aug; 29(3): 671–675. doi: 10.1046/j.1365-2958.1998.00901.x

PMCID:: PMC2978670

Abstract Article PDF–54K

Select item 281904811.

Primase Directs the Release of DnaC from DnaB

Magdalena Makowska-Grzyska, Jon M. Kaguni

Mol Cell. Author manuscript; available in PMC 2011 Jan 15.

Published in final edited form as: Mol Cell. 2010 Jan 15; 37(1): 90. doi: 10.1016/j.molcel.2009.12.031

PMCID:: PMC2819048

Abstract Article PDF–655K

Select item 280129912.

DNA Structure Specificity Conferred on a Replicative Helicase by Its Loader

Milind K. Gupta, John Atkinson, Peter McGlynn

J Biol Chem. 2010 Jan 8; 285(2): 979–987. Published online 2009 Oct 30. doi: 10.1074/jbc.M109.072520

PMCID:: PMC2801299

Abstract Article PDF–1.6M

Select item 207494213.

Genetic Method To Analyze Essential Genes of Escherichia coli

Katarzyna Hupert-Kocurek, Jay M. Sage, Magdalena Makowska-Grzyska, Jon M. Kaguni

Appl Environ Microbiol. 2007 Nov; 73(21): 7075–7082. Published online 2007 Sep 14. doi: 10.1128/AEM.01756-07

PMCID:: PMC2074942

Abstract Article PDF–210K

Select item 182094114.

Replication fork stalling and cell cycle arrest in UV-irradiated Escherichia coli

Christian J. Rudolph, Amy L. Upton, Robert G. Lloyd

Genes Dev. 2007 Mar 15; 21(6): 668–681. doi: 10.1101/gad.417607

PMCID:: PMC1820941

Abstract Article PDF–901K

Select item 168148215.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148116.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 147079517.

A dnaC mutation in Escherichia coli that affects copy number of ColE1-like plasmids and the PriA-PriB (but not Rep-PriC) pathway of chromosomal replication restart.

R Harinarayanan, J Gowrishankar

Genetics. 2004 Mar; 166(3): 1165–1176. doi: 10.1534/genetics.166.3.1165

PMCID:: PMC1470795

Summary PDF–259K

Select item 145705218.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 144959819.

Requirements for Replication Restart Proteins During Constitutive Stable DNA Replication in Escherichia coli K-12

Steven J. Sandler

Genetics. 2005 Apr; 169(4): 1799–1806. doi: 10.1534/genetics.104.036962

PMCID:: PMC1449598

Abstract Article PDF–119K

Select item 132520020.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405