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Items: 1 to 20 of 25

1.
Bacterial exonuclease III expands its enzymatic activities on single-stranded DNA
Hao Wang, Chen Ye, Qi Lu, Zhijie Jiang, Chao Jiang, Chun Zhou, Na Li, Caiqiao Zhang, Guoping Zhao, Min Yue, Yan Li
eLife. 2024; 13: RP95648. Published online 2024 Jul 3. doi: 10.7554/eLife.95648
PMCID:
PMC11221836
AbstractArticlePDF–7.4M
2.
Exonuclease III (XthA) Enforces In Vivo DNA Cloning of Escherichia coli To Create Cohesive Ends
Shingo Nozaki, Hironori Niki
J Bacteriol. 2019 Mar 1; 201(5): e00660-18. Prepublished online 2018 Dec 10. Published online 2019 Feb 11. doi: 10.1128/JB.00660-18
PMCID:
PMC6379578
AbstractArticlePDF–2.4M
3.
Insight into mechanisms of 3′-5′ exonuclease activity and removal of bulky 8,5′-cyclopurine adducts by apurinic/apyrimidinic endonucleases
Abdelghani Mazouzi, Armelle Vigouroux, Bulat Aikeshev, Philip J. Brooks, Murat K. Saparbaev, Solange Morera, Alexander A. Ishchenko
Proc Natl Acad Sci U S A. 2013 Aug 13; 110(33): E3071–E3080. Published online 2013 Jul 29. doi: 10.1073/pnas.1305281110
PMCID:
PMC3746914
AbstractArticlePDF–1.1M
4.
Interplay of cellular cAMP levels, σS activity and oxidative stress resistance in Escherichia coli
Evelyn Barth, Katherine V. Gora, Katharina M. Gebendorfer, Florian Settele, Ursula Jakob, Jeannette Winter
Microbiology (Reading) 2009 May; 155(Pt 5): 1680–1689. doi: 10.1099/mic.0.026021-0
PMCID:
PMC2848814
AbstractArticlePDF–292K
5.
Genetic Analysis of Repair and Damage Tolerance Mechanisms for DNA-Protein Cross-Links in Escherichia coli
Amir M. H. Salem, Toshiaki Nakano, Minako Takuwa, Nagisa Matoba, Tomohiro Tsuboi, Hiroaki Terato, Kazuo Yamamoto, Masami Yamada, Takehiko Nohmi, Hiroshi Ide
J Bacteriol. 2009 Sep; 191(18): 5657–5668. Published online 2009 Jul 17. doi: 10.1128/JB.00417-09
PMCID:
PMC2737949
AbstractArticlePDF–1.5M
6.
Synthetic Lethality with the dut Defect in Escherichia coli Reveals Layers of DNA Damage of Increasing Complexity Due to Uracil Incorporation
Helen Ting, Elena A. Kouzminova, Andrei Kuzminov
J Bacteriol. 2008 Sep; 190(17): 5841–5854. Published online 2008 Jun 27. doi: 10.1128/JB.00711-08
PMCID:
PMC2519533
AbstractArticlePDF–1.1M
7.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
8.
Molecular interactions of Escherichia coli ExoIX and identification of its associated 3′–5′ exonuclease activity
Michael R. G. Hodskinson, Lee M. Allen, Duncan P. Thomson, Jon R. Sayers
Nucleic Acids Res. 2007 Jun; 35(12): 4094–4102. Published online 2007 Jun 12. doi: 10.1093/nar/gkm396
PMCID:
PMC1919509
AbstractArticlePDF–4.7M
9.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
10.
Role of the tryptophan residue in the vicinity of the catalytic center of exonuclease III family AP endonucleases: AP site recognition mechanism
Kohichi Kaneda, Junichi Sekiguchi, Toshio Shida
Nucleic Acids Res. 2006; 34(5): 1552–1563. Published online 2006 Mar 15. doi: 10.1093/nar/gkl059
PMCID:
PMC1408312
AbstractArticlePDF–538K
11.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
12.
The use of thioglycollate to demonstrate DNA AP (apurinic/apyrimidinic-site) lyase activities. Biological consequences of thiol addition to the 5' product of a beta-elimination reaction at an AP site in DNA.
S Bricteux-Grégoire, W G Verly
Biochem J. 1991 Feb 1; 273(Pt 3): 777–782. doi: 10.1042/bj2730777
PMCID:
PMC1150219
SummaryPage BrowsePDF–985K
13.
2′-Deoxyribonolactone lesion produces G→A transitions in Escherichia coli
Virginie Faure, Jean-François Constant, Pascal Dumy, Murat Saparbaev
Nucleic Acids Res. 2004; 32(9): 2937–2946. Published online 2004 May 24. doi: 10.1093/nar/gkh622
PMCID:
PMC419619
AbstractArticlePDF–140K
14.
Exonuclease III recognizes urea residues in oxidized DNA.
Y W Kow, S S Wallace
Proc Natl Acad Sci U S A. 1985 Dec; 82(24): 8354–8358. doi: 10.1073/pnas.82.24.8354
PMCID:
PMC390914
SummaryPage BrowsePDF–1.0M
15.
Exonuclease III and endonuclease IV remove 3' blocks from DNA synthesis primers in H2O2-damaged Escherichia coli.
B Demple, A Johnson, D Fung
Proc Natl Acad Sci U S A. 1986 Oct; 83(20): 7731–7735. doi: 10.1073/pnas.83.20.7731
PMCID:
PMC386795
SummaryPage BrowsePDF–1.1M
16.
The relative importance of Escherichia coli exonuclease III and endonuclease IV for the hydrolysis of 3'-phosphoglycolate ends in polydeoxynucleotides.
B Siwek, S Bricteux-Grégoire, V Bailly, W G Verly
Nucleic Acids Res. 1988 Jun 10; 16(11): 5031–5038. doi: 10.1093/nar/16.11.5031
PMCID:
PMC336714
SummaryPage BrowsePDF–627K
17.
AP endonucleases and AP lyases.
V Bailly, W G Verly
Nucleic Acids Res. 1989 May 11; 17(9): 3617–3618. doi: 10.1093/nar/17.9.3617
PMCID:
PMC317828
SummaryPage BrowsePDF–205K
18.
Exonuclease III and the catalase hydroperoxidase II in Escherichia coli are both regulated by the katF gene product.
B D Sak, A Eisenstark, D Touati
Proc Natl Acad Sci U S A. 1989 May; 86(9): 3271–3275. doi: 10.1073/pnas.86.9.3271
PMCID:
PMC287112
SummaryPage BrowsePDF–1.0M
19.
Escherichia coli xth mutants are hypersensitive to hydrogen peroxide.
B Demple, J Halbrook, S Linn
J Bacteriol. 1983 Feb; 153(2): 1079–1082. doi: 10.1128/jb.153.2.1079-1082.1983
PMCID:
PMC221738
SummaryPage BrowsePDF–505K
20.
Nucleotide sequence of the nfo gene of Escherichia coli K-12.
S M Saporito, R P Cunningham
J Bacteriol. 1988 Nov; 170(11): 5141–5145. doi: 10.1128/jb.170.11.5141-5145.1988
PMCID:
PMC211582
SummaryPage BrowsePDF–1.0M

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