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Items: 1 to 20 of 22

1.
A common cis-regulatory variant impacts normal-range and disease-associated human facial shape through regulation of PKDCC during chondrogenesis
Jaaved Mohammed, Neha Arora, Harold S Matthews, Karissa Hansen, Maram Bader, Susan Walsh, John R Shaffer, Seth M Weinberg, Tomek Swigut, Peter Claes, Licia Selleri, Joanna Wysocka
eLife. 2024; 13: e82564. Published online 2024 Mar 14. doi: 10.7554/eLife.82564
PMCID:
PMC10939500
AbstractArticlePDF–4.4M
2.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
3.
Mesenchyme-derived vertebrate lonesome kinase controls lung organogenesis by altering the matrisome
Salome M. Brütsch, Elizabeta Madzharova, Sophia Pantasis, Till Wüstemann, Selina Gurri, Heiko Steenbock, Amiq Gazdhar, Gisela Kuhn, Peter Angel, Saverio Bellusci, Jürgen Brinckmann, Ulrich auf dem Keller, Sabine Werner, Mattia R. Bordoli
Cell Mol Life Sci. 2023 Apr; 80(4): 89. Published online 2023 Mar 15. doi: 10.1007/s00018-023-04735-6
PMCID:
PMC10017657
AbstractArticlePDF–5.2M
4.
Vertebrate lonesome kinase modulates the hepatocyte secretome to prevent perivascular liver fibrosis and inflammation
Sophia Pantasis, Juliane Friemel, Salome Mirjam Brütsch, Zehan Hu, Sabrina Krautbauer, Gerhard Liebisch, Joern Dengjel, Achim Weber, Sabine Werner, Mattia Renato Bordoli
J Cell Sci. 2022 Apr 1; 135(7): jcs259243. Published online 2022 Apr 12. doi: 10.1242/jcs.259243
PMCID:
PMC9016620
AbstractArticle
5.
Transcriptional heterogeneity of ventricular zone cells in the ganglionic eminences of the mouse forebrain
Dongjin R Lee, Christopher Rhodes, Apratim Mitra, Yajun Zhang, Dragan Maric, Ryan K Dale, Timothy J Petros
eLife. 2022; 11: e71864. Published online 2022 Feb 17. doi: 10.7554/eLife.71864
PMCID:
PMC8887903
AbstractArticlePDF–15M
6.
The secreted tyrosine kinase VLK is essential for normal platelet activation and thrombus formation
Leila Revollo, Glenn Merrill-Skoloff, Karen De Ceunynck, James R. Dilks, Shihui Guo, Mattia R. Bordoli, Christian G. Peters, Leila Noetzli, Andreia Ionescu, Vicki Rosen, Joseph E. Italiano, Malcolm Whitman, Robert Flaumenhaft
Blood. 2022 Jan 6; 139(1): 104–117. doi: 10.1182/blood.2020010342
PMCID:
PMC8718620
AbstractArticle
7.
SMAD4 target genes are part of a transcriptional network that integrates the response to BMP and SHH signaling during early limb bud patterning
Julie Gamart, Iros Barozzi, Frédéric Laurent, Robert Reinhardt, Laurène Ramos Martins, Thomas Oberholzer, Axel Visel, Rolf Zeller, Aimée Zuniga
Development. 2021 Dec 1; 148(23): dev200182. Published online 2021 Dec 3. doi: 10.1242/dev.200182
PMCID:
PMC8714076
AbstractArticle
8.
Conserved and species-specific chromatin remodeling and regulatory dynamics during mouse and chicken limb bud development
Shalu Jhanwar, Jonas Malkmus, Jens Stolte, Olga Romashkina, Aimée Zuniga, Rolf Zeller
Nat Commun. 2021; 12: 5685. Published online 2021 Sep 28. doi: 10.1038/s41467-021-25935-3
PMCID:
PMC8479071
AbstractArticlePDF–3.9M
9.
Cellular heterogeneity in the ureteric progenitor niche and distinct profiles of branching morphogenesis in organ development
Elisabeth A. Rutledge, Jean-Denis Benazet, Andrew P. McMahon
Development. 2017 Sep 1; 144(17): 3177–3188. doi: 10.1242/dev.149112
PMCID:
PMC5611955
AbstractArticle
10.
Spatiotemporal regulation of GLI target genes in the mammalian limb bud
Jordan P. Lewandowski, Fang Du, Shilu Zhang, Marian B. Powell, Kristin N. Falkenstein, Hongkai Ji, Steven A. Vokes
Dev Biol. Author manuscript; available in PMC 2016 Oct 1.
Published in final edited form as: Dev Biol. 2015 Oct 1; 406(1): 92–103. Published online 2015 Jul 31. doi: 10.1016/j.ydbio.2015.07.022
PMCID:
PMC4587286
AbstractArticlePDF–2.0M
11.
A SECRETED TYROSINE KINASE ACTS IN THE EXTRACELLULAR ENVIRONMENT
Mattia R. Bordoli, Jina Yum, Susanne B. Breitkopf, Jonathan N. Thon, Joseph E. Italiano, Jr, Junyu Xiao, Carolyn Worby, Swee-Kee Wong, Grace Lin, Maja Edenius, Tracy L. Keller, John M. Asara, Jack E. Dixon, Chang-Yeol Yeo, Malcolm Whitman
Cell. Author manuscript; available in PMC 2015 Aug 28.
Published in final edited form as: Cell. 2014 Aug 28; 158(5): 1033–1044. doi: 10.1016/j.cell.2014.06.048
Correction in:
volume 159 on page 955
PMCID:
PMC4149754
AbstractArticlePDF–1.2M
12.
Placental PPARγ Regulates Spatiotemporally Diverse Genes And A Unique Metabolic Network
Tali Shalom-Barak, Xiaowen Zhang, Tianjiao Chu, W. Timothy Schaiff, Janardan K. Reddy, Jianming Xu, Yoel Sadovsky, Yaacov Barak
Dev Biol. Author manuscript; available in PMC 2013 Dec 1.
Published in final edited form as: Dev Biol. 2012 Dec 1; 372(1): 143–155. Published online 2012 Aug 29. doi: 10.1016/j.ydbio.2012.08.021
PMCID:
PMC3479343
AbstractArticlePDF–3.8M
13.
Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb
Justin Cotney, Jing Leng, Sunghee Oh, Laura E. DeMare, Steven K. Reilly, Mark B. Gerstein, James P. Noonan
Genome Res. 2012 Jun; 22(6): 1069–1080. doi: 10.1101/gr.129817.111
PMCID:
PMC3371702
AbstractArticlePDF–2.2M
14.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
15.
SHH propagates distal limb bud development by enhancing CYP26B1-mediated retinoic acid clearance via AER-FGF signalling
Simone Probst, Conradin Kraemer, Philippe Demougin, Rushikesh Sheth, Gail R. Martin, Hidetaka Shiratori, Hiroshi Hamada, Dagmar Iber, Rolf Zeller, Aimée Zuniga
Development. 2011 May 15; 138(10): 1913–1923. doi: 10.1242/dev.063966
PMCID:
PMC3082298
AbstractArticle
16.
Cyclical expression of the Notch/Wnt regulator Nrarp requires modulation by Dll3 in somitogenesis
William Sewell, Duncan B. Sparrow, Allanceson J. Smith, Dorian M. Gonzalez, Eric F. Rappaport, Sally L. Dunwoodie, Kenro Kusumi
Dev Biol. Author manuscript; available in PMC 2010 May 15.
Published in final edited form as: Dev Biol. 2009 May 15; 329(2): 400–409. Published online 2009 Mar 3. doi: 10.1016/j.ydbio.2009.02.023
PMCID:
PMC2697309
AbstractArticlePDF–4.4M
17.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
18.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
19.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
20.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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