PMC Links for GEO Profiles (Select 117117755) - PMC

Select item 105402461.

Condensate cooperativity underlies transgenerational gene silencing

Du Zhenzhen, Kun Shi, Jordan S. Brown, Tao He, Wu Wei-Sheng, Ying Zhang, Lee Heng-Chi, Donglei Zhang

Cell Rep. Author manuscript; available in PMC 2023 Sep 29.

Published in final edited form as: Cell Rep. 2023 Aug 29; 42(8): 112859. Published online 2023 Jul 27. doi: 10.1016/j.celrep.2023.112859

PMCID:: PMC10540246

Abstract Article PDF–3.4M

Select item 103770222.

A Molecular Analysis of the Aminopeptidase P-Related Domain of PID-5 from Caenorhabditis elegans

Anna C. Lloyd, Kyle S. Gregory, R. Elwyn Isaac, K. Ravi Acharya

Biomolecules. 2023 Jul; 13(7): 1132. Published online 2023 Jul 14. doi: 10.3390/biom13071132

PMCID:: PMC10377022

Abstract Article PDF–14M

Select item 101016893.

A comprehensive survey of C. elegans argonaute proteins reveals organism-wide gene regulatory networks and functions

Uri Seroussi, Andrew Lugowski, Lina Wadi, Robert X Lao, Alexandra R Willis, Winnie Zhao, Adam E Sundby, Amanda G Charlesworth, Aaron W Reinke, Julie M Claycomb

eLife. 2023; 12: e83853. Published online 2023 Feb 15. doi: 10.7554/eLife.83853

PMCID:: PMC10101689

Abstract Article PDF–4.9M

Select item 90650844.

Functional identification of microRNA-centered complexes in C. elegans

Shilpa Hebbar, Ganesh Panzade, Ajay A. Vashisht, James A. Wohlschlegel, Isana Veksler-Lublinsky, Anna Y. Zinovyeva

Sci Rep. 2022; 12: 7133. Published online 2022 May 3. doi: 10.1038/s41598-022-10771-2

PMCID:: PMC9065084

Abstract Article PDF–2.2M

Select item 88266465.

Transgenerational inheritance of sexual attractiveness via small RNAs enhances evolvability in C. elegans

Itai Antoine Toker, Itamar Lev, Yael Mor, Yael Gurevich, Doron Fisher, Leah Houri-Zeevi, Olga Antonova, Hila Doron, Sarit Anava, Hila Gingold, Lilach Hadany, Shai Shaham, Oded Rechavi

Dev Cell. 2022 Feb 7; 57(3): 298–309.e9. doi: 10.1016/j.devcel.2022.01.005

PMCID:: PMC8826646

Abstract Article

Select item 83311836.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951767.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 77184808.

Germ Granules Allow Transmission of Small RNA-Based Parental Responses in the “Germ Plasm”

Itamar Lev, Oded Rechavi

iScience. 2020 Dec 18; 23(12): 101831. Published online 2020 Nov 19. doi: 10.1016/j.isci.2020.101831

PMCID:: PMC7718480

Abstract Article PDF–1.1M

Select item 67647509.

P granules protect RNA interference genes from silencing by piRNAs

John Paul T. Ouyang, Andrew Folkmann, Lauren Bernard, Chih-Yung Lee, Uri Seroussi, Amanda G. Charlesworth, Julie M. Claycomb, Geraldine Seydoux

Dev Cell. Author manuscript; available in PMC 2020 Sep 23.

Published in final edited form as: Dev Cell. 2019 Sep 23; 50(6): 716–728.e6. Published online 2019 Aug 8. doi: 10.1016/j.devcel.2019.07.026

PMCID:: PMC6764750

Abstract Article PDF–1.9M

Select item 674815310.

MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans

Ataman Sendoel, Deni Subasic, Luca Ducoli, Martin Keller, Erich Michel, Ines Kohler, Kapil Dev Singh, Xue Zheng, Anneke Brümmer, Jochen Imig, Shivendra Kishore, Yibo Wu, Alexander Kanitz, Andres Kaech, Nitish Mittal, Ana M. Matia-González, André P. Gerber, Mihaela Zavolan, Ruedi Aebersold, Jonathan Hall, Frédéric H.-T. Allain, Michael O. Hengartner

Cell Death Differ. 2019 Oct; 26(10): 2157–2178. Published online 2019 Feb 6. doi: 10.1038/s41418-019-0291-z

PMCID:: PMC6748153

Abstract Article PDF–5.7M

Select item 673942211.

Germ Granules Govern Small RNA Inheritance

Itamar Lev, Itai Antoine Toker, Yael Mor, Anat Nitzan, Guy Weintraub, Olga Antonova, Ornit Bhonkar, Itay Ben Shushan, Uri Seroussi, Julie M. Claycomb, Sarit Anava, Hila Gingold, Ronen Zaidel-Bar, Oded Rechavi

Curr Biol. 2019 Sep 9; 29(17): 2880–2891.e4. doi: 10.1016/j.cub.2019.07.054

PMCID:: PMC6739422

Abstract Article

Select item 647922712.

Spatiotemporal regulation of liquid-like condensates in epigenetic inheritance

Gang Wan, Brandon D. Fields, George Spracklin, Aditi Shukla, Carolyn M. Phillips, Scott Kennedy

Nature. Author manuscript; available in PMC 2019 Apr 24.

Published in final edited form as: Nature. 2018 May; 557(7707): 679–683. Published online 2018 May 16. doi: 10.1038/s41586-018-0132-0

PMCID:: PMC6479227

Abstract Article PDF–2.9M

Select item 485894513.

In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics

Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach

Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975

PMCID:: PMC4858945

Abstract Article PDF–3.1M

Select item 384860814.

A transgenerational impact of siRNA on chromatin: siRNA amplification in Caenorhabditis elegans generates a homology-targeted footprint of H3K9 methylated nucleosomes

Sam Guoping Gu, Julia Pak, Shouhong Guang, Jay M. Maniar, Scott Kennedy, Andrew Fire

Nat Genet. Author manuscript; available in PMC 2013 Dec 3.

Published in final edited form as: Nat Genet. 2012 Feb; 44(2): 157–164. Published online 2012 Jan 8. doi: 10.1038/ng.1039

PMCID:: PMC3848608

Abstract Article PDF–2.3M

Select item 355492115.

RNA Targets and Specificity of Staufen, a Double-stranded RNA-binding Protein in Caenorhabditis elegans

Jacqueline Baca LeGendre, Zachary T. Campbell, Peggy Kroll-Conner, Phil Anderson, Judith Kimble, Marvin Wickens

J Biol Chem. 2013 Jan 25; 288(4): 2532–2545. Published online 2012 Nov 29. doi: 10.1074/jbc.M112.397349

PMCID:: PMC3554921

Abstract Article PDF–2.3M

Select item 335331716.

Piwi and piRNAs Act Upstream of an Endogenous siRNA Pathway to suppress Tc3 Transposon Mobility in the Caenorhabditis elegans germline

Partha P. Das, Marloes P. Bagijn, Leonard D. Goldstein, Julie R. Woolford, Nicolas J. Lehrbach, Alexandra Sapetschnig, Heeran R. Buhecha, Michael J. Gilchrist, Kevin L. Howe, Rory Stark, Nik Matthews, Eugene Berezikov, René F. Ketting, Simon Tavaré, Eric A. Miska

Mol Cell. Author manuscript; available in PMC 2012 May 16.

Published in final edited form as: Mol Cell. 2008 Jul 11; 31(1): 79–90. Published online 2008 Jun 19. doi: 10.1016/j.molcel.2008.06.003

PMCID:: PMC3353317

Abstract Article PDF–2.3M

Select item 305792317.

Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal

Nat Methods. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279

PMCID:: PMC3057923

Abstract Article PDF–3.0M

Select item 31725518.

A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal

Daniel N. Cox, Anna Chao, Jeff Baker, Lisa Chang, Dan Qiao, Haifan Lin

Genes Dev. 1998 Dec 1; 12(23): 3715–3727. doi: 10.1101/gad.12.23.3715

PMCID:: PMC317255

Abstract Article PDF–1.7M

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