PMC Links for GEO Profiles (Select 117130263) - PMC

Select item 82191671.

SNX-3 mediates retromer-independent tubular endosomal recycling by opposing EEA-1-facilitated trafficking

Yangli Tian, Qiaoju Kang, Xuemeng Shi, Yuan Wang, Nali Zhang, Huan Ye, Qifeng Xu, Tao Xu, Rongying Zhang

PLoS Genet. 2021 Jun; 17(6): e1009607. Published online 2021 Jun 3. doi: 10.1371/journal.pgen.1009607

PMCID:: PMC8219167

Abstract Article PDF–6.0M

Select item 62165902.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 58194003.

Extracellular vesicle budding is inhibited by redundant regulators of TAT-5 flippase localization and phospholipid asymmetry

Katharina B. Beer, Jennifer Rivas-Castillo, Kenneth Kuhn, Gholamreza Fazeli, Birgit Karmann, Jeremy F. Nance, Christian Stigloher, Ann M. Wehman

Proc Natl Acad Sci U S A. 2018 Feb 6; 115(6): E1127–E1136. Published online 2018 Jan 24. doi: 10.1073/pnas.1714085115

PMCID:: PMC5819400

Abstract Article PDF–1.6M

Select item 54944744.

Molecular definitions of autophagy and related processes

Lorenzo Galluzzi, Eric H Baehrecke, Andrea Ballabio, Patricia Boya, José Manuel Bravo‐San Pedro, Francesco Cecconi, Augustine M Choi, Charleen T Chu, Patrice Codogno, Maria Isabel Colombo, Ana Maria Cuervo, Jayanta Debnath, Vojo Deretic, Ivan Dikic, Eeva‐Liisa Eskelinen, Gian Maria Fimia, Simone Fulda, David A Gewirtz, Douglas R Green, Malene Hansen, J Wade Harper, Marja Jäättelä, Terje Johansen, Gabor Juhasz, Alec C Kimmelman, Claudine Kraft, Nicholas T Ktistakis, Sharad Kumar, Beth Levine, Carlos Lopez‐Otin, Frank Madeo, Sascha Martens, Jennifer Martinez, Alicia Melendez, Noboru Mizushima, Christian Münz, Leon O Murphy, Josef M Penninger, Mauro Piacentini, Fulvio Reggiori, David C Rubinsztein, Kevin M Ryan, Laura Santambrogio, Luca Scorrano, Anna Katharina Simon, Hans‐Uwe Simon, Anne Simonsen, Nektarios Tavernarakis, Sharon A Tooze, Tamotsu Yoshimori, Junying Yuan, Zhenyu Yue, Qing Zhong, Guido Kroemer

EMBO J. 2017 Jul 3; 36(13): 1811–1836. Published online 2017 Jun 8. doi: 10.15252/embj.201796697

PMCID:: PMC5494474

Abstract Article PDF–1.0M

Select item 51298685.

Developmentally programmed germ cell remodeling by endodermal cell cannibalism

Yusuff Abdu, Chelsea Maniscalco, John M. Heddleston, Teng-Leong Chew, Jeremy Nance

Nat Cell Biol. Author manuscript; available in PMC 2017 May 14.

Published in final edited form as: Nat Cell Biol. 2016 Dec; 18(12): 1302–1310. Published online 2016 Nov 14. doi: 10.1038/ncb3439

PMCID:: PMC5129868

Abstract Article PDF–1.6M

Select item 47811306.

Vulval development.

Paul W Sternberg

WormBook. 2005 : 1–28. Published online 2005 Jun 25. doi: 10.1895/wormbook.1.6.1

PMCID:: PMC4781130

Abstract Article

Select item 47809777.

RTK/Ras/MAPK signaling.

Meera V Sundaram

WormBook. 2006 : 1–19. Published online 2006 Feb 11. doi: 10.1895/wormbook.1.80.1

PMCID:: PMC4780977

Abstract Article

Select item 45236108.

PtdIns(4,5)P₂ and PtdIns3P coordinate to regulate phagosomal sealing for apoptotic cell clearance

Shiya Cheng, Kun Wang, Wei Zou, Rui Miao, Yaling Huang, Haibin Wang, Xiaochen Wang

J Cell Biol. 2015 Aug 3; 210(3): 485–502. doi: 10.1083/jcb.201501038

PMCID:: PMC4523610

Abstract Article PDF–4.0M

Select item 36582779.

SH3 interactome conserves general function over specific form

Xiaofeng Xin, David Gfeller, Jackie Cheng, Raffi Tonikian, Lin Sun, Ailan Guo, Lianet Lopez, Alevtina Pavlenco, Adenrele Akintobi, Yingnan Zhang, Jean-François Rual, Bridget Currell, Somasekar Seshagiri, Tong Hao, Xinping Yang, Yun A Shen, Kourosh Salehi-Ashtiani, Jingjing Li, Aaron T Cheng, Dryden Bouamalay, Adrien Lugari, David E Hill, Mark L Grimes, David G Drubin, Barth D Grant, Marc Vidal, Charles Boone, Sachdev S Sidhu, Gary D Bader

Mol Syst Biol. 2013; 9: 652. Published online 2013 Apr 2. doi: 10.1038/msb.2013.9

PMCID:: PMC3658277

Abstract Article PDF–2.3M

Select item 365614410.

Clathrin and AP2 Are Required for Phagocytic Receptor-Mediated Apoptotic Cell Clearance in Caenorhabditis elegans

Didi Chen, Youli Jian, Xuezhao Liu, Yuanya Zhang, Jingjing Liang, Xiaying Qi, Hongwei Du, Wei Zou, Lianwan Chen, Yongping Chai, Guangshuo Ou, Long Miao, Yingchun Wang, Chonglin Yang

PLoS Genet. 2013 May; 9(5): e1003517. Published online 2013 May 16. doi: 10.1371/journal.pgen.1003517

PMCID:: PMC3656144

Abstract Article PDF–6.4M

Select item 326031411.

Two PI 3-Kinases and One PI 3-Phosphatase Together Establish the Cyclic Waves of Phagosomal PtdIns(3)P Critical for the Degradation of Apoptotic Cells

Nan Lu, Qian Shen, Timothy R. Mahoney, Lukas J. Neukomm, Ying Wang, Zheng Zhou

PLoS Biol. 2012 Jan; 10(1): e1001245. Published online 2012 Jan 17. doi: 10.1371/journal.pbio.1001245

PMCID:: PMC3260314

Abstract Article PDF–2.8M

Select item 310207712.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 307296813.

A Conserved Role for SNX9-Family Members in the Regulation of Phagosome Maturation during Engulfment of Apoptotic Cells

Johann Almendinger, Kimon Doukoumetzidis, Jason M. Kinchen, Andres Kaech, Kodi S. Ravichandran, Michael O. Hengartner

PLoS One. 2011; 6(4): e18325. Published online 2011 Apr 8. doi: 10.1371/journal.pone.0018325

PMCID:: PMC3072968

Abstract Article PDF–5.1M

Select item 303146614.

Three sorting nexins drive the degradation of apoptotic cells in response to PtdIns(3)P signaling

Nan Lu, Qian Shen, Timothy R. Mahoney, Xianghua Liu, Zheng Zhou

Mol Biol Cell. 2011 Feb 1; 22(3): 354–374. doi: 10.1091/mbc.e10-09-0756

PMCID:: PMC3031466

Abstract Article PDF–34M

Select item 285154915.

A novel pathway for phagosome maturation during engulfment of apoptotic cells

Jason M. Kinchen, Kimon Doukoumetzidis, Johann Almendinger, Lilli Stergiou, Annie Tosello-Trampont, Costi D. Sifri, Michael O. Hengartner, Kodi S. Ravichandran

Nat Cell Biol. Author manuscript; available in PMC 2010 Apr 8.

Published in final edited form as: Nat Cell Biol. 2008 May; 10(5): 556–566. Published online 2008 Apr 20. doi: 10.1038/ncb1718

PMCID:: PMC2851549

Abstract Article PDF–5.7M

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