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Items: 1 to 20 of 29

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
Gene Loss Predictably Drives Evolutionary Adaptation
Jana Helsen, Karin Voordeckers, Laura Vanderwaeren, Toon Santermans, Maria Tsontaki, Kevin J Verstrepen, Rob Jelier
Mol Biol Evol. 2020 Oct; 37(10): 2989–3002. Published online 2020 Jul 13. doi: 10.1093/molbev/msaa172
PMCID:
PMC7530610
AbstractArticlePDF–1.8M
3.
Extranuclear Structural Components that Mediate Dynamic Chromosome Movements in Yeast Meiosis
Chih-Ying Lee, Carlos Gaston Bisig, Michael M. Conrad, Yanina Ditamo, Luciana Previato, Michael E. Dresser, Roberto J. Pezza
Curr Biol. Author manuscript; available in PMC 2021 Apr 6.
Published in final edited form as: Curr Biol. 2020 Apr 6; 30(7): 1207–1216.e4. Published online 2020 Feb 13. doi: 10.1016/j.cub.2020.01.054
PMCID:
PMC7181386
AbstractArticlePDF–1.1M
4.
Spatial and temporal regulation of the endoproteolytic activity of the SPS-sensor–controlled Ssy5 signaling protease
António Martins, Andreas Ring, Deike J. Omnus, Stijn Heessen, Thorsten Pfirrmann, Per O. Ljungdahl
Mol Biol Cell. 2019 Oct 1; 30(21): 2709–2720. doi: 10.1091/mbc.E19-02-0096
PMCID:
PMC6761765
AbstractArticlePDF–2.2M
5.
Ssy5 is a signaling serine protease that exhibits atypical biogenesis and marked S1 specificity
António Martins, Thorsten Pfirrmann, Stijn Heessen, Gustav Sundqvist, Vincent Bulone, Claes Andréasson, Per O. Ljungdahl
J Biol Chem. 2018 Jun 1; 293(22): 8362–8378. Published online 2018 Apr 16. doi: 10.1074/jbc.RA118.002457
PMCID:
PMC5986222
AbstractArticlePDF–5.0M
6.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
7.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
8.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
9.
A Cytosolic Network Suppressing Mitochondria-Mediated Proteostatic Stress and Cell Death
Xiaowen Wang, Xin Jie Chen
Nature. Author manuscript; available in PMC 2016 Feb 27.
Published in final edited form as: Nature. 2015 Aug 27; 524(7566): 481–484. Published online 2015 Jul 20. doi: 10.1038/nature14859
PMCID:
PMC4582408
AbstractArticlePDF–2.3M
10.
Reduced Ssy1-Ptr3-Ssy5 (SPS) Signaling Extends Replicative Life Span by Enhancing NAD+ Homeostasis in Saccharomyces cerevisiae
Felicia Tsang, Christol James, Michiko Kato, Victoria Myers, Irtqa Ilyas, Matthew Tsang, Su-Ju Lin
J Biol Chem. 2015 May 15; 290(20): 12753–12764. Published online 2015 Mar 30. doi: 10.1074/jbc.M115.644534
PMCID:
PMC4432292
AbstractArticlePDF–1.7M
11.
Immunity of the Saccharomyces cerevisiae SSY5 mRNA to nonsense-mediated mRNA decay
Jesseeca Obenoskey, Dakota R. Lane, Audrey L. Atkin, Bessie W. Kebaara
Front Mol Biosci. 2014; 1: 25. Published online 2014 Dec 8. doi: 10.3389/fmolb.2014.00025
PMCID:
PMC4428434
AbstractArticlePDF–4.6M
12.
Latency of transcription factor Stp1 depends on a modular regulatory motif that functions as cytoplasmic retention determinant and nuclear degron
Deike J. Omnus, Per O. Ljungdahl
Mol Biol Cell. 2014 Nov 15; 25(23): 3823–3833. doi: 10.1091/mbc.E14-06-1140
PMCID:
PMC4230787
AbstractArticlePDF–2.3M
13.
SOMA: A Single Oligonucleotide Mutagenesis and Cloning Approach
Thorsten Pfirrmann, Ashwin Lokapally, Claes Andréasson, Per Ljungdahl, Thomas Hollemann
PLoS One. 2013; 8(6): e64870. Published online 2013 Jun 4. doi: 10.1371/journal.pone.0064870
PMCID:
PMC3672168
AbstractArticlePDF–804K
14.
Rts1-protein phosphatase 2A antagonizes Ptr3-mediated activation of the signaling protease Ssy5 by casein kinase I
Deike J. Omnus, Per O. Ljungdahl
Mol Biol Cell. 2013 May 1; 24(9): 1480–1492. doi: 10.1091/mbc.E13-01-0019
PMCID:
PMC3639058
AbstractArticlePDF–3.8M
15.
A phosphodegron controls nutrient-induced proteasomal activation of the signaling protease Ssy5
Deike J. Omnus, Thorsten Pfirrmann, Claes Andréasson, Per O. Ljungdahl
Mol Biol Cell. 2011 Aug 1; 22(15): 2754–2765. doi: 10.1091/mbc.E11-04-0282
PMCID:
PMC3145550
AbstractArticlePDF–2.7M
16.
Amino Acid Signaling in Yeast: Activation of Ssy5 Protease Is Associated with Its Phosphorylation-induced Ubiquitylation
Fadi Abdel-Sater, Cathy Jean, Ahmad Merhi, Stéphan Vissers, Bruno André
J Biol Chem. 2011 Apr 8; 286(14): 12006–12015. Published online 2011 Feb 10. doi: 10.1074/jbc.M110.200592
PMCID:
PMC3069403
AbstractArticlePDF–1.9M
17.
Differential Regulation of Transcription Factors Stp1 and Stp2 in the Ssy1-Ptr3-Ssy5 Amino Acid Sensing Pathway
Sylvester Tumusiime, Chen Zhang, Melissa S. Overstreet, Zhengchang Liu
J Biol Chem. 2011 Feb 11; 286(6): 4620–4631. Published online 2010 Dec 2. doi: 10.1074/jbc.M110.195313
PMCID:
PMC3039348
AbstractArticlePDF–1.4M
18.
The Prodomain of Ssy5 Protease Controls Receptor-Activated Proteolysis of Transcription Factor Stp1
Thorsten Pfirrmann, Stijn Heessen, Deike J. Omnus, Claes Andréasson, Per O. Ljungdahl
Mol Cell Biol. 2010 Jul; 30(13): 3299–3309. Published online 2010 Apr 26. doi: 10.1128/MCB.00323-10
PMCID:
PMC2897576
AbstractArticlePDF–1.4M
19.
Long 3′-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae
Bessie W. Kebaara, Audrey L. Atkin
Nucleic Acids Res. 2009 May; 37(9): 2771–2778. Published online 2009 Mar 6. doi: 10.1093/nar/gkp146
PMCID:
PMC2685090
AbstractArticlePDF–1.4M
20.
Association of yeast Upf1p with direct substrates of the NMD pathway
Marcus J. O. Johansson, Feng He, Phyllis Spatrick, Chunfang Li, Allan Jacobson
Proc Natl Acad Sci U S A. 2007 Dec 26; 104(52): 20872–20877. Published online 2007 Dec 17. doi: 10.1073/pnas.0709257105
PMCID:
PMC2409234
AbstractArticlePDF–864K

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