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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 92098113.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 71765334.

Critical roles of a RhoGEF-anillin module in septin architectural remodeling during cytokinesis

Xi Chen, Kangji Wang, Tatyana Svitkina, Erfei Bi

Curr Biol. Author manuscript; available in PMC 2021 Apr 20.

Published in final edited form as: Curr Biol. 2020 Apr 20; 30(8): 1477–1490.e3. Published online 2020 Mar 19. doi: 10.1016/j.cub.2020.02.023

PMCID:: PMC7176533

Abstract Article PDF–2.0M

Select item 64034585.

Aggregate Filamentous Growth Responses in Yeast

Jacky Chow, Heather M. Dionne, Aditi Prabhakar, Amit Mehrotra, Jenn Somboonthum, Beatriz Gonzalez, Mira Edgerton, Paul J. Cullen

mSphere. 2019 Mar-Apr; 4(2): e00702-18. Published online 2019 Mar 6. doi: 10.1128/mSphere.00702-18

PMCID:: PMC6403458

Abstract Article PDF–3.4M

Select item 62157136.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 61930477.

Recruitment of the mitotic exit network to yeast centrosomes couples septin displacement to actomyosin constriction

Davide Tamborrini, Maria Angeles Juanes, Sandy Ibanes, Giulia Rancati, Simonetta Piatti

Nat Commun. 2018; 9: 4308. Published online 2018 Oct 17. doi: 10.1038/s41467-018-06767-0

PMCID:: PMC6193047

Abstract Article PDF–4.0M

Select item 57653598.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 56618859.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560192010.

P-body proteins regulate transcriptional rewiring to promote DNA replication stress resistance

Raphael Loll-Krippleber, Grant W. Brown

Nat Commun. 2017; 8: 558. Published online 2017 Sep 15. doi: 10.1038/s41467-017-00632-2

PMCID:: PMC5601920

Abstract Article PDF–3.8M

Select item 560025411.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 547375512.

Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28

Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink

G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317

Correction in:: G3 (Bethesda). 2019 Aug; 9(8): 2787.

PMCID:: PMC5473755

Abstract Article PDF–2.7M

Select item 500709113.

Detection of protein–protein interactions at the septin collar in Saccharomyces cerevisiae using a tripartite split-GFP system

Gregory C. Finnigan, Angela Duvalyan, Elizabeth N. Liao, Aspram Sargsyan, Jeremy Thorner

Mol Biol Cell. 2016 Sep 1; 27(17): 2708–2725. doi: 10.1091/mbc.E16-05-0337

PMCID:: PMC5007091

Abstract Article PDF–12M

Select item 475245914.

Identification of Cell Cycle Dependent Interaction Partners of the Septins by Quantitative Mass Spectrometry

Christian Renz, Silke Oeljeklaus, Sören Grinhagens, Bettina Warscheid, Nils Johnsson, Thomas Gronemeyer

PLoS One. 2016; 11(2): e0148340. Published online 2016 Feb 12. doi: 10.1371/journal.pone.0148340

PMCID:: PMC4752459

Abstract Article PDF–3.8M

Select item 470301215.

Target selection by natural and redesigned PUF proteins

Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens

Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112

PMCID:: PMC4703012

Abstract Article PDF–1.3M

Select item 461603916.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 456931517.

Rho1- and Pkc1-dependent phosphorylation of the F-BAR protein Syp1 contributes to septin ring assembly

Laura Merlini, Alessio Bolognesi, Maria Angeles Juanes, Franck Vandermoere, Thibault Courtellemont, Roberta Pascolutti, Martial Séveno, Yves Barral, Simonetta Piatti

Mol Biol Cell. 2015 Sep 15; 26(18): 3245–3262. doi: 10.1091/mbc.E15-06-0366

PMCID:: PMC4569315

Abstract Article PDF–11M

Select item 434656118.

Huan Wu, Jia Guo, Ya-Ting Zhou, Xiang-Dong Gao

Eukaryot Cell. 2015 Mar; 14(3): 241–251. Prepublished online 2015 Jan 9. Published online 2015 Mar 2. doi: 10.1128/EC.00268-14

PMCID:: PMC4346561

Abstract Article PDF–2.1M

Select item 424869219.

Off-Target Effects of the Septin Drug Forchlorfenuron on Nonplant Eukaryotes

Lydia R. Heasley, Galo Garcia, III, Michael A. McMurray

Eukaryot Cell. 2014 Nov; 13(11): 1411–1420. doi: 10.1128/EC.00191-14

PMCID:: PMC4248692

Abstract Article PDF–1.7M

Select item 408570720.

Bud3 activates Cdc42 to establish a proper growth site in budding yeast

Pil Jung Kang, Mid Eum Lee, Hay-Oak Park

J Cell Biol. 2014 Jul 7; 206(1): 19–28. doi: 10.1083/jcb.201402040

PMCID:: PMC4085707

Abstract Article PDF–2.3M

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