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Items: 19

1.
Substrate recognition mechanism of the endoplasmic reticulum-associated ubiquitin ligase Doa10
Kevin Wu, Samuel Itskanov, Diane L. Lynch, Yuanyuan Chen, Aasha Turner, James C. Gumbart, Eunyong Park
Nat Commun. 2024; 15: 2182. Published online 2024 Mar 11. doi: 10.1038/s41467-024-46409-2
PMCID:
PMC10928120
AbstractArticlePDF–5.2M
2.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
5.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
6.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
7.
Protein-RNA networks revealed through covalent RNA marks
Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens
Nat Methods. Author manuscript; available in PMC 2016 May 18.
Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651
PMCID:
PMC4707952
AbstractArticlePDF–856K
8.
Mediator Acts Upstream of the Transcriptional Activator Gal4
Keven Ang, Gary Ee, Edwin Ang, Elvin Koh, Wee Leng Siew, Yu Mun Chan, Sabrina Nur, Yee Sun Tan, Norbert Lehming
PLoS Biol. 2012 Mar; 10(3): e1001290. Published online 2012 Mar 27. doi: 10.1371/journal.pbio.1001290
PMCID:
PMC3313914
AbstractArticlePDF–2.1M
9.
The Complete Spectrum of Yeast Chromosome Instability Genes Identifies Candidate CIN Cancer Genes and Functional Roles for ASTRA Complex Components
Peter C. Stirling, Michelle S. Bloom, Tejomayee Solanki-Patil, Stephanie Smith, Payal Sipahimalani, Zhijian Li, Megan Kofoed, Shay Ben-Aroya, Kyungjae Myung, Philip Hieter
PLoS Genet. 2011 Apr; 7(4): e1002057. Published online 2011 Apr 28. doi: 10.1371/journal.pgen.1002057
PMCID:
PMC3084213
AbstractArticlePDF–710K
10.
Identification of Residue-to-residue Contact between a Peptide Ligand and Its G Protein-coupled Receptor Using Periodate-mediated Dihydroxyphenylalanine Cross-linking and Mass Spectrometry
George K. E. Umanah, Liyin Huang, Fa-xiang Ding, Boris Arshava, Adam R. Farley, Andrew J. Link, Fred Naider, Jeffrey M. Becker
J Biol Chem. 2010 Dec 10; 285(50): 39425–39436. Published online 2010 Oct 4. doi: 10.1074/jbc.M110.149500
PMCID:
PMC2998077
AbstractArticlePDF–1.6M
11.
A ubiquitin-selective AAA-ATPase mediates transcriptional switching by remodeling a repressor-promoter DNA complex
Alexander J. Wilcox, Jeffrey D. Laney
Nat Cell Biol. Author manuscript; available in PMC 2010 Jun 1.
Published in final edited form as: Nat Cell Biol. 2009 Dec; 11(12): 1481–1486. Published online 2009 Nov 15. doi: 10.1038/ncb1997
PMCID:
PMC2787718
AbstractArticlePDF–746K
12.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
13.
Cross-Linking of a DOPA-Containing Peptide Ligand into its G Protein-Coupled Receptor
George K. E. Umanah, Cagdas Son, FaXiang Ding, Fred Naider, Jeffrey M. Becker
Biochemistry. Author manuscript; available in PMC 2010 Mar 10.
Published in final edited form as: Biochemistry. 2009 Mar 10; 48(9): 2033–2044. doi: 10.1021/bi802061z
PMCID:
PMC2693260
AbstractArticlePDF–3.0M
14.
Double-Mutant Cycle Scanning of the Interaction of a Peptide Ligand and its G Protein-Coupled Receptor
Fred Naider, Jeffrey M. Becker, Yong–Hun Lee, Amnon Horovitz
Biochemistry. Author manuscript; available in PMC 2008 Dec 1.
Published in final edited form as: Biochemistry. 2007 Mar 20; 46(11): 3476–3481. Published online 2007 Feb 14. doi: 10.1021/bi602415u
PMCID:
PMC2590777
AbstractArticlePDF–505K
15.
Alpha-factor structural gene mutations in Saccharomyces cerevisiae: effects on alpha-factor production and mating.
J Kurjan
Mol Cell Biol. 1985 Apr; 5(4): 787–796. doi: 10.1128/mcb.5.4.787
PMCID:
PMC366783
SummaryPage BrowsePDF–2.0M
16.
Identification of a DNA segment that is necessary and sufficient for alpha-specific gene control in Saccharomyces cerevisiae: implications for regulation of alpha-specific and a-specific genes.
E E Jarvis, D C Hagen, G F Sprague, Jr
Mol Cell Biol. 1988 Jan; 8(1): 309–320. doi: 10.1128/mcb.8.1.309
PMCID:
PMC363126
SummaryPage BrowsePDF–2.3M
17.
Regulation of alpha-factor production in Saccharomyces cerevisiae: a-factor pheromone-induced expression of the MF alpha 1 and STE13 genes.
T Achstetter
Mol Cell Biol. 1989 Oct; 9(10): 4507–4514. doi: 10.1128/mcb.9.10.4507
PMCID:
PMC362535
SummaryPage BrowsePDF–1.7M
18.
Saccharomyces cerevisiae contains two discrete genes coding for the alpha-factor pheromone.
A Singh, E Y Chen, J M Lugovoy, C N Chang, R A Hitzeman, P H Seeburg
Nucleic Acids Res. 1983 Jun 25; 11(12): 4049–4063. doi: 10.1093/nar/11.12.4049
PMCID:
PMC326024
SummaryPage BrowsePDF–1.5M
19.
Biological activity of the Asn-5,Arg-7 tridecapeptide encoded by MF alpha 2 of Saccharomyces cerevisiae.
S Raths, P Shenbagamurthi, F Naider, J M Becker
J Bacteriol. 1986 Dec; 168(3): 1468–1471. doi: 10.1128/jb.168.3.1468-1471.1986
PMCID:
PMC213664
SummaryPage BrowsePDF–667K

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