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Items: 1 to 20 of 32

1.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
A piggybacking mechanism enables peroxisomal localization of the glyoxylate cycle enzyme Mdh2 in yeast
Shiran Gabay-Maskit, Luis Daniel Cruz-Zaragoza, Nadav Shai, Miriam Eisenstein, Chen Bibi, Nir Cohen, Tobias Hansen, Eden Yifrach, Nofar Harpaz, Ruth Belostotsky, Wolfgang Schliebs, Maya Schuldiner, Ralf Erdmann, Einat Zalckvar
J Cell Sci. 2020 Dec 15; 133(24): jcs244376. Published online 2020 Dec 17. doi: 10.1242/jcs.244376
PMCID:
PMC7758625
AbstractArticle
4.
Membrane Processing and Steady-State Regulation of the Alternative Peroxisomal Import Receptor Pex9p
Markus Rudowitz, Ralf Erdmann, Wolfgang Schliebs
Front Cell Dev Biol. 2020; 8: 566321. Published online 2020 Oct 22. doi: 10.3389/fcell.2020.566321
PMCID:
PMC7642143
AbstractArticlePDF–9.9M
5.
Saccharomyces cerevisiae cells lacking Pex3 contain membrane vesicles that harbor a subset of peroxisomal membrane proteins
Justyna P. Wroblewska, Luis Daniel Cruz-Zaragoza, Yuan Wei, Andreas Schummer, Silvia G. Chuartzman, Rinse de Boer, Silke Oeljeklaus, Maya Schuldiner, Einat Zalckvar, Bettina Warscheid, Ralf Erdmann, Ida J. van der Klei
Biochim Biophys Acta Mol Cell Res. Author manuscript; available in PMC 2021 Jul 31.
Published in final edited form as: Biochim Biophys Acta Mol Cell Res. 2017 Oct 1; 1864(10): 1656–1667. Published online 2017 May 26. doi: 10.1016/j.bbamcr.2017.05.021
PMCID:
PMC7611440
AbstractArticlePDF–2.3M
6.
A synthetic biosensor to detect peroxisomal acetyl-CoA concentration for compartmentalized metabolic engineering
Herbert M. Huttanus, Ryan S. Senger
PeerJ. 2020; 8: e9805. Published online 2020 Sep 8. doi: 10.7717/peerj.9805
PMCID:
PMC7485502
AbstractArticlePDF–405K
7.
Genome-wide SWAp-tag yeast libraries for proteome exploration
Uri Weill, Ido Yofe, Ehud Sass, Bram Stynen, Dan Davidi, Janani Natarajan, Reut Ben Menachem, Zohar Avihou, Omer Goldman, Nofar Harpaz, Silvia Chuartzman, Kiril Kniazev, Barbara Knoblach, Janina Laborenz, Felix Boos, Jacqueline Kowarzyk, Shifra Ben-Dor, Einat Zalckvar, Johannes M. Herrmann, Richard A. Rachubinski, Ophry Pines, Doron Rapaport, Stephen W. Michnick, Emmanuel D. Levy, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2019 Jan 9.
Published in final edited form as: Nat Methods. 2018 Aug; 15(8): 617–622. Published online 2018 Jul 9. doi: 10.1038/s41592-018-0044-9
Correction in:
Nat Methods. 2019 Jan 2
PMCID:
PMC6076999
AbstractArticlePDF–1.7M
8.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
9.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
10.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
11.
A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466
PMCID:
PMC4764573
AbstractArticlePDF–5.7M
12.
Role of Pex21p for Piggyback Import of Gpd1p and Pnc1p into Peroxisomes of Saccharomyces cerevisiae
Daniel Effelsberg, Luis Daniel Cruz-Zaragoza, Jason Tonillo, Wolfgang Schliebs, Ralf Erdmann
J Biol Chem. 2015 Oct 16; 290(42): 25333–25342. Published online 2015 Aug 15. doi: 10.1074/jbc.M115.653451
PMCID:
PMC4646183
AbstractArticlePDF–1.9M
13.
The significance of peroxisome function in chronological aging of Saccharomyces cerevisiae
Sophie D Lefevre, Carlo W van Roermund, Ronald J A Wanders, Marten Veenhuis, Ida J van der Klei
Aging Cell. 2013 Oct; 12(5): 784–793. Published online 2013 Jul 8. doi: 10.1111/acel.12113
PMCID:
PMC3824234
AbstractArticlePDF–578K
14.
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis
Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman
Cell. Author manuscript; available in PMC 2014 Jan 17.
Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001
PMCID:
PMC3553497
AbstractArticlePDF–5.1M
15.
Cysteine-dependent Ubiquitination of Pex18p Is Linked to Cargo Translocation across the Peroxisomal Membrane
Astrid Hensel, Sabrina Beck, Fouzi El Magraoui, Harald W. Platta, Wolfgang Girzalsky, Ralf Erdmann
J Biol Chem. 2011 Dec 16; 286(50): 43495–43505. Published online 2011 Oct 23. doi: 10.1074/jbc.M111.286104
PMCID:
PMC3234802
AbstractArticlePDF–3.9M
16.
Genome-Wide Analysis of Effectors of Peroxisome Biogenesis
Ramsey A. Saleem, Rose Long-O'Donnell, David J. Dilworth, Abraham M. Armstrong, Arvind P. Jamakhandi, Yakun Wan, Theo A. Knijnenburg, Antti Niemistö, John Boyle, Richard A. Rachubinski, Ilya Shmulevich, John D. Aitchison
PLoS One. 2010; 5(8): e11953. Published online 2010 Aug 4. doi: 10.1371/journal.pone.0011953
PMCID:
PMC2915925
AbstractArticlePDF–2.4M
17.
High Quality Binary Protein Interaction Map of the Yeast Interactome Network
Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amélie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-László Barabási, Jan Tavernier, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2009 Sep 18.
Published in final edited form as: Science. 2008 Oct 3; 322(5898): 104–110. Published online 2008 Aug 21. doi: 10.1126/science.1158684
PMCID:
PMC2746753
AbstractArticlePDF–2.2M
18.
Isolation of peroxisome assembly mutants from Saccharomyces cerevisiae with different morphologies using a novel positive selection procedure
J Cell Biol. 1992 Oct 1; 119(1): 153–162. doi: 10.1083/jcb.119.1.153
PMCID:
PMC2289622
SummaryPDF–2.8M
19.
Pex18p and Pex21p, a Novel Pair of Related Peroxins Essential for Peroxisomal Targeting by the PTS2 Pathway
P. Edward Purdue, Xudong Yang, Paul B. Lazarow
J Cell Biol. 1998 Dec 28; 143(7): 1859–1869. doi: 10.1083/jcb.143.7.1859
PMCID:
PMC2175223
AbstractArticlePDF–974K
20.
Pex7p translocates in and out of peroxisomes in Saccharomyces cerevisiae
Devi M. Nair, P. Edward Purdue, Paul B. Lazarow
J Cell Biol. 2004 Nov 22; 167(4): 599–604. doi: 10.1083/jcb.200407119
PMCID:
PMC2172567
AbstractArticlePDF–692K

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