PMC Links for GEO Profiles (Select 118283525) - PMC

Connor M. Kean, Christopher J. Tracy, Apratim Mitra, Beenish Rahat, Matthew T. Van Winkle, Claudia M. Gebert, Jacob A. Noeker, Anne L. Calof, Arthur D. Lander, Judith A. Kassis, Karl Pfeifer

Sci Adv. 2022 Nov; 8(48): eadd4136. Published online 2022 Nov 30. doi: 10.1126/sciadv.add4136

PMCID:: PMC9710879

Abstract Article PDF–1.5M

Select item 85006244.

BRD4 orchestrates genome folding to promote neural crest differentiation

Ricardo Linares-Saldana, Wonho Kim, Nikhita A. Bolar, Haoyue Zhang, Bailey A. Koch-Bojalad, Sora Yoon, Parisha P. Shah, Ashley Karnay, Daniel S. Park, Jennifer M. Luppino, Son C. Nguyen, Arun Padmanabhan, Cheryl L. Smith, Andrey Poleshko, Qiaohong Wang, Li Li, Deepak Srivastava, Golnaz Vahedi, Gwang Hyeon Eom, Gerd A. Blobel, Eric F. Joyce, Rajan Jain

Nat Genet. Author manuscript; available in PMC 2022 Apr 5.

Published in final edited form as: Nat Genet. 2021 Oct; 53(10): 1480–1492. Published online 2021 Oct 5. doi: 10.1038/s41588-021-00934-8

Correction in:: Nat Genet. 2021 Nov 1

PMCID:: PMC8500624

Abstract Article PDF–6.6M

Select item 81315955.

Neuronal genes deregulated in Cornelia de Lange Syndrome respond to removal and re-expression of cohesin

Felix D. Weiss, Lesly Calderon, Yi-Fang Wang, Radina Georgieva, Ya Guo, Nevena Cvetesic, Maninder Kaur, Gopuraja Dharmalingam, Ian D. Krantz, Boris Lenhard, Amanda G. Fisher, Matthias Merkenschlager

Nat Commun. 2021; 12: 2919. Published online 2021 May 18. doi: 10.1038/s41467-021-23141-9

PMCID:: PMC8131595

Abstract Article PDF–3.9M

Select item 79387706.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 77394667.

Identification of FMRP target mRNAs in the developmental brain: FMRP might coordinate Ras/MAPK, Wnt/β-catenin, and mTOR signaling during corticogenesis

Cristine R. Casingal, Takako Kikkawa, Hitoshi Inada, Yukio Sasaki, Noriko Osumi

Mol Brain. 2020; 13: 167. Published online 2020 Dec 16. doi: 10.1186/s13041-020-00706-1

PMCID:: PMC7739466

Abstract Article PDF–1.5M

Select item 75614878.

IRX3/5 regulate mitotic chromatid segregation and limb bud shape

Hirotaka Tao, Jean-Philippe Lambert, Theodora M. Yung, Min Zhu, Noah A. Hahn, Danyi Li, Kimberly Lau, Kendra Sturgeon, Vijitha Puviindran, Xiaoyun Zhang, Wuming Gong, Xiao Xiao Chen, Gregory Anderson, Daniel J. Garry, R. Mark Henkelman, Yu Sun, Angelo Iulianella, Yasuhiko Kawakami, Anne-Claude Gingras, Chi-chung Hui, Sevan Hopyan

Development. 2020 Oct 1; 147(19): dev180042. Published online 2020 Oct 5. doi: 10.1242/dev.180042

PMCID:: PMC7561487

Abstract Article

Select item 73684949.

The sperm associated antigen 6 interactome and its role in spermatogenesis

Yunhao Liu, Ling Zhang, Wei Li, Yuhong Li, Junpin Liu, Shiyang Zhang, Guanglun Pin, Shizhen Song, Pierre F Ray, Christophe Arnoult, Chunghee Cho, Balbina Garcia-Reyes, Uwe Knippschild, Jerome F. Strauss, III, Zhibing Zhang

Reproduction. Author manuscript; available in PMC 2020 Jul 18.

Published in final edited form as: Reproduction. 2019 Aug; 158(2): 181–197. doi: 10.1530/REP-18-0522

PMCID:: PMC7368494

Abstract Article PDF–1.8M

Select item 646957710.

BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange-like syndrome

Gabrielle Olley, Morad Ansari, Hemant Bengani, Graeme R Grimes, James Rhodes, Alex von Kriegsheim, Ana Blatnik, Fiona J. Stewart, Emma Wakeling, Nicola Carroll, Alison Ross, Soo-Mi Park, DDD study, Wendy A Bickmore, Madapura M Pradeepa, David R FitzPatrick

Nat Genet. Author manuscript; available in PMC 2019 Apr 17.

Published in final edited form as: Nat Genet. 2018 Mar; 50(3): 329–332. Published online 2018 Jan 29. doi: 10.1038/s41588-018-0042-y

Correction in:: Nat Genet. 2018 Feb 12

Correction in:: Nat Genet. 2019 Jun 3

PMCID:: PMC6469577

Abstract Article PDF–871K

Select item 568730311.

Two independent modes of chromatin organization revealed by cohesin removal

Wibke Schwarzer, Nezar Abdennur, Anton Goloborodko, Aleksandra Pekowska, Geoffrey Fudenberg, Yann Loe-Mie, Nuno A Fonseca, Wolfgang Huber, Christian Haering, Leonid Mirny, Francois Spitz

Nature. Author manuscript; available in PMC 2018 Mar 27.

Published in final edited form as: Nature. 2017 Nov 2; 551(7678): 51–56. Published online 2017 Sep 27. doi: 10.1038/nature24281

PMCID:: PMC5687303

Abstract Article PDF–5.8M

Select item 564508212.

Spatio-temporal profile of postynaptic interactomes integrates components of complex brain disorders

Jing Li, Wangshu Zhang, Hui Yang, Daniel P. Howrigan, Brent Wilkinson, Tade Souaiaia, Oleg V. Evgrafov, Giulio Genovese, Veronica A. Clementel, Jennifer C. Tudor, Ted Abel, James A. Knowles, Benjamin M. Neale, Kai Wang, Fengzhu Sun, Marcelo P. Coba

Nat Neurosci. Author manuscript; available in PMC 2018 Aug 1.

Published in final edited form as: Nat Neurosci. 2017 Aug; 20(8): 1150–1161. Published online 2017 Jun 26. doi: 10.1038/nn.4594

PMCID:: PMC5645082

Abstract Article PDF–2.3M

Select item 557409313.

The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and target gene expression: modeling Cornelia de Lange syndrome

Daniel A. Newkirk, Yen-Yun Chen, Richard Chien, Weihua Zeng, Jacob Biesinger, Ebony Flowers, Shimako Kawauchi, Rosaysela Santos, Anne L. Calof, Arthur D. Lander, Xiaohui Xie, Kyoko Yokomori

Clin Epigenetics. 2017; 9: 89. Published online 2017 Aug 25. doi: 10.1186/s13148-017-0391-x

PMCID:: PMC5574093

Abstract Article PDF–3.3M

Select item 526325614.

Nipbl Interacts with Zfp609 and the Integrator Complex to Regulate Cortical Neuron Migration

Debbie L.C. van den Berg, Roberta Azzarelli, Koji Oishi, Ben Martynoga, Noelia Urbán, Dick H.W. Dekkers, Jeroen A. Demmers, François Guillemot

Neuron. 2017 Jan 18; 93(2): 348–361. doi: 10.1016/j.neuron.2016.11.047

PMCID:: PMC5263256

Abstract Article

Select item 501600215.

Conditional Creation and Rescue of Nipbl-Deficiency in Mice Reveals Multiple Determinants of Risk for Congenital Heart Defects

Rosaysela Santos, Shimako Kawauchi, Russell E. Jacobs, Martha E. Lopez-Burks, Hojae Choi, Jamie Wikenheiser, Benedikt Hallgrimsson, Heather A. Jamniczky, Scott E. Fraser, Arthur D. Lander, Anne L. Calof

PLoS Biol. 2016 Sep; 14(9): e2000197. Published online 2016 Sep 8. doi: 10.1371/journal.pbio.2000197

PMCID:: PMC5016002

Abstract Article PDF–20M

Select item 492139216.

Genetic Enhancement of Limb Defects in a Mouse Model of Cornelia de Lange Syndrome

MARTHA E. LOPEZ-BURKS, ROSAYSELA SANTOS, SHIMAKO KAWAUCHI, ANNE L. CALOF, ARTHUR D. LANDER

Am J Med Genet C Semin Med Genet. Author manuscript; available in PMC 2016 Jun 27.

Published in final edited form as: Am J Med Genet C Semin Med Genet. 2016 Jun; 172(2): 146–154. Published online 2016 Apr 27. doi: 10.1002/ajmg.c.31491

PMCID:: PMC4921392

Abstract Article PDF–1.0M

Select item 490478517.

NIPBL Controls RNA Biogenesis to Prevent Activation of the Stress Kinase PKR

Kobe C. Yuen, Baoshan Xu, Ian D. Krantz, Jennifer L. Gerton

Cell Rep. Author manuscript; available in PMC 2016 Jun 13.

Published in final edited form as: Cell Rep. 2016 Jan 5; 14(1): 93–102. Published online 2015 Dec 24. doi: 10.1016/j.celrep.2015.12.012

PMCID:: PMC4904785

Abstract Article PDF–577K

Select item 490201718.

Cornelia de Lange syndrome is caused by mutations in NIPBL, the human homolog of Drosophila melanogaster Nipped-B

Ian D Krantz, Jennifer McCallum, Cheryl DeScipio, Maninder Kaur, Lynette A Gillis, Dinah Yaeger, Lori Jukofsky, Nora Wasserman, Armand Bottani, Colleen A Morris, Malgorzata J M Nowaczyk, Helga Toriello, Michael J Bamshad, John C Carey, Eric Rappaport, Shimako Kawauchi, Arthur D Lander, Anne L Calof, Hui-hua Li, Marcella Devoto, Laird G Jackson

Nat Genet. Author manuscript; available in PMC 2016 Jun 10.

Published in final edited form as: Nat Genet. 2004 Jun; 36(6): 631–635. Published online 2004 May 16. doi: 10.1038/ng1364

PMCID:: PMC4902017

Abstract Article PDF–1.2M

Select item 417775219.

Nipbl and Mediator Cooperatively Regulate Gene Expression to Control Limb Development

Akihiko Muto, Shingo Ikeda, Martha E. Lopez-Burks, Yutaka Kikuchi, Anne L. Calof, Arthur D. Lander, Thomas F. Schilling

PLoS Genet. 2014 Sep; 10(9): e1004671. Published online 2014 Sep 25. doi: 10.1371/journal.pgen.1004671

PMCID:: PMC4177752

Abstract Article PDF–2.1M

Select item 407349420.

The Central Role of EED in the Orchestration of Polycomb Group Complexes

Qi Cao, Xiaoju Wang, Meng Zhao, Rendong Yang, Rohit Malik, Yuanyuan Qiao, Anton Poliakov, Anastasia K. Yocum, Yong Li, Wei Chen, Xuhong Cao, Xia Jiang, Arun Dahiya, Clair Harris, Felix Y. Feng, Sundeep Kalantry, Zhaohui S. Qin, Saravana M. Dhanasekaran, Arul M. Chinnaiyan

Nat Commun. Author manuscript; available in PMC 2014 Jul 24.

Published in final edited form as: Nat Commun. 2014; 5: 3127. doi: 10.1038/ncomms4127

PMCID:: PMC4073494

Abstract Article PDF–2.1M

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