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Select item 79387701.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 71165362.

Neutralizing Gatad2a-Chd4-Mbd3/NuRD Complex Facilitates Deterministic Induction of Naïve Pluripotency

Nofar Mor, Yoach Rais, Daoud Sheban, Shani Peles, Alejandro Aguilera-Castrejon, Asaf Zviran, Dalia Elinger, Sergey Viukov, Shay Geula, Vladislav Krupalnik, Mirie Zerbib, Elad Chomsky, Lior Lasman, Tom Shani, Jonathan Bayerl, Ohad Gafni, Suhair Hanna, Jason D. Buenrostro, Tzachi Hagai, Hagit Masika, Gintautas Vainorius, Yehudit Bergman, William J. Greenleaf, Miguel A. Esteban, Ulrich Elling, Yishai Levin, Rada Massarwa, Yifat Merbl, Noa Novershtern, Jacob H. Hanna

Cell Stem Cell. Author manuscript; available in PMC 2021 Jan 4.

Published in final edited form as: Cell Stem Cell. 2018 Sep 6; 23(3): 412–425.e10. Published online 2018 Aug 16. doi: 10.1016/j.stem.2018.07.004

PMCID:: PMC7116536

Abstract Article PDF–2.5M

Select item 65761503.

The Nucleosome Remodelling and Deacetylation complex suppresses transcriptional noise during lineage commitment

Thomas Burgold, Michael Barber, Susan Kloet, Julie Cramard, Sarah Gharbi, Robin Floyd, Masaki Kinoshita, Meryem Ralser, Michiel Vermeulen, Nicola Reynolds, Sabine Dietmann, Brian Hendrich

EMBO J. 2019 Jun 17; 38(12): e100788. Published online 2019 Apr 29. doi: 10.15252/embj.2018100788

PMCID:: PMC6576150

Abstract Article PDF–6.7M

Select item 61138904.

The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6→ Tbr2→ Tbr1

Gina E. Elsen, Francesco Bedogni, Rebecca D. Hodge, Theo K. Bammler, James W. MacDonald, Susan Lindtner, John L. R. Rubenstein, Robert F. Hevner

Front Neurosci. 2018; 12: 571. Published online 2018 Aug 22. doi: 10.3389/fnins.2018.00571

PMCID:: PMC6113890

Abstract Article PDF–4.8M

Select item 56450825.

Spatio-temporal profile of postynaptic interactomes integrates components of complex brain disorders

Jing Li, Wangshu Zhang, Hui Yang, Daniel P. Howrigan, Brent Wilkinson, Tade Souaiaia, Oleg V. Evgrafov, Giulio Genovese, Veronica A. Clementel, Jennifer C. Tudor, Ted Abel, James A. Knowles, Benjamin M. Neale, Kai Wang, Fengzhu Sun, Marcelo P. Coba

Nat Neurosci. Author manuscript; available in PMC 2018 Aug 1.

Published in final edited form as: Nat Neurosci. 2017 Aug; 20(8): 1150–1161. Published online 2017 Jun 26. doi: 10.1038/nn.4594

PMCID:: PMC5645082

Abstract Article PDF–2.3M

Select item 56263936.

Mbd3/NuRD controls lymphoid cell fate and inhibits tumorigenesis by repressing a B cell transcriptional program

Stephen J. Loughran, Federico Comoglio, Fiona K. Hamey, Alice Giustacchini, Youssef Errami, Eleanor Earp, Berthold Göttgens, Sten Eirik W. Jacobsen, Adam J. Mead, Brian Hendrich, Anthony R. Green

J Exp Med. 2017 Oct 2; 214(10): 3085–3104. doi: 10.1084/jem.20161827

PMCID:: PMC5626393

Abstract Article PDF–3.2M

Select item 54149857.

Smek promotes corticogenesis through regulating Mbd3’s stability and Mbd3/NuRD complex recruitment to genes associated with neurogenesis

Byoung-San Moon, Hyung-Mun Yun, Wen-Hsuan Chang, Bradford H. Steele, Mingyang Cai, Si Ho Choi, Wange Lu

PLoS Biol. 2017 May; 15(5): e2001220. Published online 2017 May 3. doi: 10.1371/journal.pbio.2001220

PMCID:: PMC5414985

Abstract Article PDF–12M

Select item 51118858.

DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells

Sarah J Hainer, Kurtis N McCannell, Jun Yu, Ly-Sha Ee, Lihua J Zhu, Oliver J Rando, Thomas G Fazzio

eLife. 2016; 5: e21964. Published online 2016 Nov 16. doi: 10.7554/eLife.21964

PMCID:: PMC5111885

Abstract Article PDF–4.8M

Select item 50476759.

Sall4 controls differentiation of pluripotent cells independently of the Nucleosome Remodelling and Deacetylation (NuRD) complex

Anzy Miller, Meryem Ralser, Susan L. Kloet, Remco Loos, Ryuichi Nishinakamura, Paul Bertone, Michiel Vermeulen, Brian Hendrich

Development. 2016 Sep 1; 143(17): 3074–3084. doi: 10.1242/dev.139113

PMCID:: PMC5047675

Abstract Article

Select item 492482610.

Misregulation of Alternative Splicing in a Mouse Model of Rett Syndrome

Ronghui Li, Qiping Dong, Xinni Yuan, Xin Zeng, Yu Gao, Cassandra Chiao, Hongda Li, Xinyu Zhao, Sunduz Keles, Zefeng Wang, Qiang Chang

PLoS Genet. 2016 Jun; 12(6): e1006129. Published online 2016 Jun 28. doi: 10.1371/journal.pgen.1006129

PMCID:: PMC4924826

Abstract Article PDF–1.9M

Select item 488299111.

MiR‐134‐Mbd3 axis regulates the induction of pluripotency

Lei Zhang, Yongchao Zheng, Yuanqing Sun, Ying Zhang, Jia yan, Zhifeng Chen, Hong Jiang

J Cell Mol Med. 2016 Jun; 20(6): 1150–1158. Published online 2016 Feb 29. doi: 10.1111/jcmm.12805

PMCID:: PMC4882991

Abstract Article PDF–1.0M

Select item 469194812.

Elf5-centered transcription factor hub controls trophoblast stem cell self-renewal and differentiation through stoichiometry-sensitive shifts in target gene networks

Paulina A. Latos, Arnold R. Sienerth, Alexander Murray, Claire E. Senner, Masanaga Muto, Masahito Ikawa, David Oxley, Sarah Burge, Brian J. Cox, Myriam Hemberger

Genes Dev. 2015 Dec 1; 29(23): 2435–2448. doi: 10.1101/gad.268821.115

PMCID:: PMC4691948

Abstract Article PDF–1.0M

Select item 469075013.

CIGARETTE SMOKE INDUCES PROTEASOMAL-MEDIATED DEGRADATION OF DNA METHYLTRANSFERASES AND METHYL CpG-/CpG DOMAIN-BINDING PROTEINS IN EMBRYONIC OROFACIAL CELLS

Partha Mukhopadhyay, Robert M. Greene, M. Michele Pisano

Reprod Toxicol. Author manuscript; available in PMC 2016 Dec 1.

Published in final edited form as: Reprod Toxicol. 2015 Dec; 58: 140–148. Published online 2015 Oct 22. doi: 10.1016/j.reprotox.2015.10.009

PMCID:: PMC4690750

Abstract Article PDF–730K

Select item 452520314.

Fgf and Esrrb integrate epigenetic and transcriptional networks that regulate self-renewal of trophoblast stem cells

Paulina A. Latos, Angela Goncalves, David Oxley, Hisham Mohammed, Ernest Turro, Myriam Hemberger

Nat Commun. 2015; 6: 7776. Published online 2015 Jul 24. doi: 10.1038/ncomms8776

PMCID:: PMC4525203

Abstract Article PDF–1.9M

Select item 445871115.

Functional Proteomic Analysis of Repressive Histone Methyltransferase Complexes Reveals ZNF518B as a G9A Regulator

Verena K. Maier, Caitlin M. Feeney, Jordan E. Taylor, Amanda L. Creech, Jana W. Qiao, Attila Szanto, Partha P. Das, Nicholas Chevrier, Catherine Cifuentes-Rojas, Stuart H. Orkin, Steven A. Carr, Jacob D. Jaffe, Philipp Mertins, Jeannie T. Lee

Mol Cell Proteomics. 2015 Jun; 14(6): 1435–1446. Published online 2015 Feb 13. doi: 10.1074/mcp.M114.044586

PMCID:: PMC4458711

Abstract Article PDF–2.6M

Select item 443281416.

The methyl binding domain 3/nucleosome remodelling and deacetylase complex regulates neural cell fate determination and terminal differentiation in the cerebral cortex

Erin Knock, João Pereira, Patrick D Lombard, Andrew Dimond, Donna Leaford, Frederick J Livesey, Brian Hendrich

Neural Dev. 2015; 10: 13. Published online 2015 May 2. doi: 10.1186/s13064-015-0040-z

PMCID:: PMC4432814

Abstract Article PDF–3.5M

Select item 408271917.

MBD3/NuRD Facilitates Induction of Pluripotency in a Context-Dependent Manner

Rodrigo L. dos Santos, Luca Tosti, Aliaksandra Radzisheuskaya, Isabel M. Caballero, Keisuke Kaji, Brian Hendrich, José C.R. Silva

Cell Stem Cell. 2014 Jul 3; 15(1): 102–110. doi: 10.1016/j.stem.2014.04.019

Correction in:: Cell Stem Cell. 2014 Sep 4; 15(3): 392.

PMCID:: PMC4082719

Abstract Article PDF–2.4M

Select item 394807618.

Diversity of two forms of DNA methylation in the brain

Yuanyuan Chen, Nur P. Damayanti, Joseph Irudayaraj, Kenneth Dunn, Feng C. Zhou

Front Genet. 2014; 5: 46. Published online 2014 Mar 10. doi: 10.3389/fgene.2014.00046

PMCID:: PMC3948076

Abstract Article PDF–3.7M

Select item 374619819.

A direct physical interaction between Nanog and Sox2 regulates embryonic stem cell self-renewal

Alessia Gagliardi, Nicholas P Mullin, Zi Ying Tan, Douglas Colby, Anastasia I Kousa, Florian Halbritter, Jason T Weiss, Anastasia Felker, Karel Bezstarosti, Rebecca Favaro, Jeroen Demmers, Silvia K Nicolis, Simon R Tomlinson, Raymond A Poot, Ian Chambers

EMBO J. 2013 Aug 14; 32(16): 2231–2247. Published online 2013 Jul 26. doi: 10.1038/emboj.2013.161

PMCID:: PMC3746198

Abstract Article PDF–2.9M

Select item 373458120.

Phosphoinositide-specific Phospholipase C β 1b (PI-PLCβ1b) Interactome: Affinity Purification-Mass Spectrometry Analysis of PI-PLCβ1b with Nuclear Protein

Manuela Piazzi, William L. Blalock, Alberto Bavelloni, Irene Faenza, Antonietta D'Angelo, Nadir M. Maraldi, Lucio Cocco

Mol Cell Proteomics. 2013 Aug; 12(8): 2220–2235. Published online 2013 May 9. doi: 10.1074/mcp.M113.029686

PMCID:: PMC3734581

Abstract Article PDF–1.9M

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