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Items: 1 to 20 of 52

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin
Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison
J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060
PMCID:
PMC10292210
AbstractArticlePDF–5.9M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
The catalytic activity of the translation termination factor methyltransferase Mtq2-Trm112 complex is required for large ribosomal subunit biogenesis
Caroline Lacoux, Ludivine Wacheul, Kritika Saraf, Nicolas Pythoud, Emmeline Huvelle, Sabine Figaro, Marc Graille, Christine Carapito, Denis L J Lafontaine, Valérie Heurgué-Hamard
Nucleic Acids Res. 2020 Dec 2; 48(21): 12310–12325. Published online 2020 Nov 9. doi: 10.1093/nar/gkaa972
PMCID:
PMC7708063
AbstractArticlePDF–4.8M
6.
The deubiquitylase Ubp15 couples transcription to mRNA export
Fanny Eyboulet, Célia Jeronimo, Jacques Côté, François Robert
eLife. 2020; 9: e61264. Published online 2020 Nov 23. doi: 10.7554/eLife.61264
PMCID:
PMC7682988
AbstractArticlePDF–1.4M
7.
Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2
Lisbeth-Carolina Aguilar, Biplab Paul, Taylor Reiter, Louis Gendron, Arvind Arul Nambi Rajan, Rachel Montpetit, Christian Trahan, Sebastian Pechmann, Marlene Oeffinger, Ben Montpetit
Nucleic Acids Res. 2020 Nov 18; 48(20): 11675–11694. Published online 2020 Nov 2. doi: 10.1093/nar/gkaa964
PMCID:
PMC7672433
AbstractArticlePDF–6.0M
8.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
9.
Saccharomyces cerevisiae Gle2/Rae1 is involved in septin organization, essential for cell cycle progression
Gesa Zander, Wilfried Kramer, Anika Seel, Heike Krebber
Yeast. 2017 Nov; 34(11): 459–470. Published online 2017 Sep 28. doi: 10.1002/yea.3249
PMCID:
PMC6472880
AbstractArticlePDF–1.9M
10.
Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation
Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch
PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180
PMCID:
PMC6347170
AbstractArticlePDF–16M
11.
Integrative Structure and Functional Anatomy of a Nuclear Pore Complex
Seung Joong Kim, Javier Fernandez-Martinez, Ilona Nudelman, Yi Shi, Wenzhu Zhang, Barak Raveh, Thurston Herricks, Brian D. Slaughter, Joanna Hogan, Paula Upla, Ilan E. Chemmama, Riccardo Pellarin, Ignacia Echeverria, Manjunatha Shivaraju, Azraa S. Chaudhury, Junjie Wang, Rosemary Williams, Jay R. Unruh, Charles H. Greenberg, Erica Y. Jacobs, Zhiheng Yu, M. Jason de la Cruz, Roxana Mironska, David L. Stokes, John D. Aitchison, Martin F. Jarrold, Jennifer L. Gerton, Steven J. Ludtke, Christopher W. Akey, Brian T. Chait, Andrej Sali, Michael P. Rout
Nature. Author manuscript; available in PMC 2018 Sep 14.
Published in final edited form as: Nature. 2018 Mar 22; 555(7697): 475–482. Published online 2018 Mar 14. doi: 10.1038/nature26003
PMCID:
PMC6022767
AbstractArticlePDF–9.5M
12.
Natively unfolded FG-repeats stabilize the structure of the nuclear pore complex
Evgeny Onischenko, Jeffrey H. Tang, Kasper R. Andersen, Kevin E. Knockenhauer, Pascal Vallotton, Carina P. Derrer, Annemarie Kralt, Christopher F. Mugler, Leon Y. Chan, Thomas U. Schwartz, Karsten Weis
Cell. Author manuscript; available in PMC 2018 Nov 2.
Published in final edited form as: Cell. 2017 Nov 2; 171(4): 904–917.e19. Published online 2017 Oct 12. doi: 10.1016/j.cell.2017.09.033
PMCID:
PMC5992322
AbstractArticlePDF–1.4M
13.
Brr6 and Brl1 locate to nuclear pore complex assembly sites to promote their biogenesis
Wanlu Zhang, Annett Neuner, Diana Rüthnick, Timo Sachsenheimer, Christian Lüchtenborg, Britta Brügger, Elmar Schiebel
J Cell Biol. 2018 Mar 5; 217(3): 877–894. doi: 10.1083/jcb.201706024
PMCID:
PMC5839787
AbstractArticlePDF–4.7M
14.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
15.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
16.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
17.
Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform
Javier Fernandez-Martinez, Seung Joong Kim, Yi Shi, Paula Upla, Riccardo Pellarin, Michael Gagnon, Ilan E. Chemmama, Junjie Wang, Ilona Nudelman, Wenzhu Zhang, Rosemary Williams, William J. Rice, David L. Stokes, Daniel Zenklusen, Brian T. Chait, Andrej Sali, Michael P. Rout
Cell. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Cell. 2016 Nov 17; 167(5): 1215–1228.e25. Published online 2016 Nov 10. doi: 10.1016/j.cell.2016.10.028
PMCID:
PMC5130164
AbstractArticlePDF–2.8M
18.
Ribosome-Associated Mba1 Escorts Cox2 from Insertion Machinery to Maturing Assembly Intermediates
Isotta Lorenzi, Silke Oeljeklaus, Christin Ronsör, Bettina Bareth, Bettina Warscheid, Peter Rehling, Sven Dennerlein
Mol Cell Biol. 2016 Nov 15; 36(22): 2782–2793. Prepublished online 2016 Aug 22. Published online 2016 Oct 28. doi: 10.1128/MCB.00361-16
PMCID:
PMC5086520
AbstractArticlePDF–2.4M
19.
Quantifying Nucleoporin Stoichiometry Inside Single Nuclear Pore Complexes In vivo
Lan Mi, Alexander Goryaynov, Andre Lindquist, Michael Rexach, Weidong Yang
Sci Rep. 2015; 5: 9372. Published online 2015 Mar 23. doi: 10.1038/srep09372
PMCID:
PMC4894440
AbstractArticlePDF–1.1M
20.
Target selection by natural and redesigned PUF proteins
Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
PMCID:
PMC4703012
AbstractArticlePDF–1.3M

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