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Select item 92934691.

The developmental hourglass model is applicable to the spinal cord based on single‐cell transcriptomes and non‐conserved cis‐regulatory elements

Katsuki Mukaigasa, Chie Sakuma, Hiroyuki Yaginuma

Dev Growth Differ. 2021 Sep; 63(7): 372–391. Published online 2021 Sep 28. doi: 10.1111/dgd.12750

PMCID:: PMC9293469

Article PDF–5.3M

Select item 88215932.

Fgf8 dynamics and critical slowing down may account for the temperature independence of somitogenesis

Weiting Zhang, Pierluigi Scerbo, Marine Delagrange, Virginie Candat, Vanessa Mayr, Sophie Vriz, Martin Distel, Bertrand Ducos, David Bensimon

Commun Biol. 2022; 5: 113. Published online 2022 Feb 7. doi: 10.1038/s42003-022-03053-0

PMCID:: PMC8821593

Article PDF–1.9M

Select item 84380363.

CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression

Martin Franke, Elisa De la Calle-Mustienes, Ana Neto, María Almuedo-Castillo, Ibai Irastorza-Azcarate, Rafael D. Acemel, Juan J. Tena, José M. Santos-Pereira, José L. Gómez-Skarmeta

Nat Commun. 2021; 12: 5415. Published online 2021 Sep 13. doi: 10.1038/s41467-021-25604-5

PMCID:: PMC8438036

Article PDF–3.9M

Select item 80775064.

The alx3 gene shapes the zebrafish neurocranium by regulating frontonasal neural crest cell differentiation timing

Jennyfer M. Mitchell, Juliana Sucharov, Anthony T. Pulvino, Elliott P. Brooks, Austin E. Gillen, James T. Nichols

Development. 2021 Apr 1; 148(7): dev197483. Published online 2021 Apr 15. doi: 10.1242/dev.197483

PMCID:: PMC8077506

Article

Select item 78863385.

An atlas of neural crest lineages along the posterior developing zebrafish at single-cell resolution

Aubrey GA Howard, IV, Phillip A Baker, Rodrigo Ibarra-García-Padilla, Joshua A Moore, Lucia J Rivas, James J Tallman, Eileen W Singleton, Jessa L Westheimer, Julia A Corteguera, Rosa A Uribe

eLife. 2021; 10: e60005. Published online 2021 Feb 16. doi: 10.7554/eLife.60005

PMCID:: PMC7886338

Article PDF–10M

Select item 77383906.

The Cdx Transcription Factors and Retinoic Acid Play Parallel Roles in Antero-Posterior Position of the Pectoral Fin Field During Gastrulation

Christopher A. Quintanilla, Robert K. Ho

Mech Dev. Author manuscript; available in PMC 2021 Dec 1.

Published in final edited form as: Mech Dev. 2020 Dec; 164: 103644. Published online 2020 Sep 8. doi: 10.1016/j.mod.2020.103644

PMCID:: PMC7738390

Article PDF–1.4M

Select item 60203137.

Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh, Jennifer M. Maurer, Charles G. Sagerström

Neural Dev. 2018; 13: 13. Published online 2018 Jun 26. doi: 10.1186/s13064-018-0112-y

PMCID:: PMC6020313

Article PDF–3.5M

Select item 59069208.

The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes

Martin Malmstrøm, Ralf Britz, Michael Matschiner, Ole K Tørresen, Renny Kurnia Hadiaty, Norsham Yaakob, Heok Hui Tan, Kjetill Sigurd Jakobsen, Walter Salzburger, Lukas Rüber

Genome Biol Evol. 2018 Apr; 10(4): 1088–1103. Published online 2018 Mar 15. doi: 10.1093/gbe/evy058

PMCID:: PMC5906920

Article PDF–949K

Select item 57557149.

Vagus motor neuron topographic map determined by parallel mechanisms of hox5 expression and time of axon initiation

Gabrielle R. Barsh, Adam J. Isabella, Cecilia B. Moens

Curr Biol. Author manuscript; available in PMC 2018 Dec 18.

Published in final edited form as: Curr Biol. 2017 Dec 18; 27(24): 3812–3825.e3. Published online 2017 Dec 7. doi: 10.1016/j.cub.2017.11.022

PMCID:: PMC5755714

Article PDF–1.2M

Select item 554604210.

Zebrafish Znfl1 proteins control the expression of hoxb1b gene in the posterior neuroectoderm by acting upstream of pou5f3 and sall4 genes

Xiaohua Dong, Jingyun Li, Luqingqing He, Chun Gu, Wenshuang Jia, Yunyun Yue, Jun Li, Qinxin Zhang, Lele Chu, Qingshun Zhao

J Biol Chem. 2017 Aug 4; 292(31): 13045–13055. Published online 2017 Jun 16. doi: 10.1074/jbc.M117.777094

PMCID:: PMC5546042

Article PDF–2.9M

Select item 542795511.

Retinoic Acid Receptor Subtype-Specific Transcriptotypes in the Early Zebrafish Embryo

Eric Samarut, Cyril Gaudin, Sandrine Hughes, Benjamin Gillet, Simon de Bernard, Pierre-Emmanuel Jouve, Laurent Buffat, Alexis Allot, Odile Lecompte, Liubov Berekelya, Cécile Rochette-Egly, Vincent Laudet

Mol Endocrinol. 2014 Feb; 28(2): 260–272. Published online 2014 Jan 8. doi: 10.1210/me.2013-1358

PMCID:: PMC5427955

Article

Select item 487073212.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

Jeremy Pasquier, Cédric Cabau, Thaovi Nguyen, Elodie Jouanno, Dany Severac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe

BMC Genomics. 2016; 17: 368. Published online 2016 May 18. doi: 10.1186/s12864-016-2709-z

PMCID:: PMC4870732

Article PDF–1.8M

Select item 463413713.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Article PDF–5.5M

Select item 417775214.

Nipbl and Mediator Cooperatively Regulate Gene Expression to Control Limb Development

Akihiko Muto, Shingo Ikeda, Martha E. Lopez-Burks, Yutaka Kikuchi, Anne L. Calof, Arthur D. Lander, Thomas F. Schilling

PLoS Genet. 2014 Sep; 10(9): e1004671. Published online 2014 Sep 25. doi: 10.1371/journal.pgen.1004671

PMCID:: PMC4177752

Article PDF–2.1M

Select item 406191715.

Targeted germ line disruptions reveal general and species-specific roles for paralog group 1 hox genes in zebrafish

Steven E Weicksel, Ankit Gupta, Denise A Zannino, Scot A Wolfe, Charles G Sagerström

BMC Dev Biol. 2014; 14: 25. Published online 2014 Jun 5. doi: 10.1186/1471-213X-14-25

PMCID:: PMC4061917

Article PDF–2.5M

Select item 380099816.

A Hox gene controls lateral line cell migration by regulating chemokine receptor expression downstream of Wnt signaling

Marie A. Breau, David G. Wilkinson, Qiling Xu

Proc Natl Acad Sci U S A. 2013 Oct 15; 110(42): 16892–16897. Published online 2013 Sep 30. doi: 10.1073/pnas.1306282110

Correction in:: Proc Natl Acad Sci U S A. 2013 Nov 26; 110(48): 19651.

PMCID:: PMC3800998

Article PDF–1.4M

Select item 379176917.

Evidence for at least six Hox clusters in the Japanese lamprey (Lethenteron japonicum)

Tarang K. Mehta, Vydianathan Ravi, Shinichi Yamasaki, Alison P. Lee, Michelle M. Lian, Boon-Hui Tay, Sumanty Tohari, Seiji Yanai, Alice Tay, Sydney Brenner, Byrappa Venkatesh

Proc Natl Acad Sci U S A. 2013 Oct 1; 110(40): 16044–16049. Published online 2013 Sep 16. doi: 10.1073/pnas.1315760110