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Select item 107877911.

Loss of Mptx2 alters bacteria composition and intestinal homeostasis potentially by impairing autophagy

Weihui Yan, Shanshan Chen, Ying Wang, Yaying You, Ying Lu, Weipeng Wang, Bo Wu, Jun Du, Shicheng Peng, Wei Cai, Yongtao Xiao

Commun Biol. 2024; 7: 94. Published online 2024 Jan 13. doi: 10.1038/s42003-024-05785-7

PMCID:: PMC10787791

Abstract Article PDF–21M

Select item 91737552.

Autophagy in PDGFRα+ mesenchymal cells is essential for intestinal stem cell survival

Yang Yang, Maria Gomez, Timothy Marsh, Laura Poillet-Perez, Akshada Sawant, Lei Chen, Noel R. Park, S. RaElle Jackson, Zhixian Hu, Noa Alon, Chen Liu, Jayanta Debnath, Jun-Lin Guan, Shawn Davidson, Michael Verzi, Eileen White

Proc Natl Acad Sci U S A. 2022 May 24; 119(21): e2202016119. Published online 2022 May 10. doi: 10.1073/pnas.2202016119

PMCID:: PMC9173755

Abstract Article PDF–4.1M

Select item 90156993.

The ATG5 interactome links clathrin-mediated vesicular trafficking with the autophagosome assembly machinery

Kiren Baines, Kazuaki Yoshioka, Yoh Takuwa, Jon D. Lane

Autophagy Rep. 2022; 1(1): 88–118. Published online 2022 Apr 7. doi: 10.1080/27694127.2022.2042054

PMCID:: PMC9015699

Abstract Article PDF–3.3M

Select item 90145594.

Functional genomic landscape of cancer-intrinsic evasion of killing by T cells

Keith A. Lawson, Cristovão M. Sousa, Xiaoyu Zhang, Eiru Kim, Rummy Akthar, Joseph J. Caumanns, Yuxi Yao, Nicholas Mikolajewicz, Catherine Ross, Kevin R. Brown, Abdelrahman Abou Zid, Zi Peng Fan, Shirley Hui, Jordan A. Krall, Donald M. Simons, Chloe J. Slater, Victor De Jesus, Lujia Tang, Richa Singh, Joshua E. Goldford, Sarah Martin, Qian Huang, Elizabeth A. Francis, Andrea Habsid, Ryan Climie, David Tieu, Jiarun Wei, Ren Li, Amy Hin Yan Tong, Michael Aregger, Katherine S. Chan, Hong Han, Xiaowei Wang, Patricia Mero, John H. Brumell, Antonio Finelli, Laurie Ailles, Gary Bader, Gromoslaw A. Smolen, Gillian A. Kingsbury, Traver Hart, Charles Kung, Jason Moffat

Nature. Author manuscript; available in PMC 2022 Apr 18.

Published in final edited form as: Nature. 2020 Oct; 586(7827): 120–126. Published online 2020 Sep 23. doi: 10.1038/s41586-020-2746-2

PMCID:: PMC9014559

Abstract Article PDF–6.6M

Select item 82476035.

Autophagy in stromal fibroblasts promotes tumor desmoplasia and mammary tumorigenesis

Jenny A. Rudnick, Teresa Monkkonen, Florie A. Mar, James M. Barnes, Hanna Starobinets, Juliet Goldsmith, Srirupa Roy, Sofía Bustamante Eguiguren, Valerie M. Weaver, Jayanta Debnath

Genes Dev. 2021 Jul 1; 35(13-14): 963–975. doi: 10.1101/gad.345629.120

PMCID:: PMC8247603

Abstract Article PDF–36M

Select item 79387706.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 79364687.

Augmented BMP signaling commits cranial neural crest cells to a chondrogenic fate by suppressing autophagic β-catenin degradation

Jingwen Yang, Megumi Kitami, Haichun Pan, Masako Toda Nakamura, Honghao Zhang, Fei Liu, Lingxin Zhu, Yoshihiro Komatsu, Yuji Mishina

Sci Signal. Author manuscript; available in PMC 2021 Jul 12.

Published in final edited form as: Sci Signal. 2021 Jan 12; 14(665): eaaz9368. Published online 2021 Jan 12. doi: 10.1126/scisignal.aaz9368

PMCID:: PMC7936468

Abstract Article PDF–4.0M

Select item 79177058.

Scanning Electron-Assisted Dielectric Microscopy Reveals Autophagosome Formation by LC3 and ATG12 in Cultured Mammalian Cells

Tomoko Okada, Toshihiko Ogura

Int J Mol Sci. 2021 Feb; 22(4): 1834. Published online 2021 Feb 12. doi: 10.3390/ijms22041834

PMCID:: PMC7917705

Abstract Article PDF–3.9M

Select item 74696159.

BIRC5/Survivin is a novel ATG12–ATG5 conjugate interactor and an autophagy-induced DNA damage suppressor in human cancer and mouse embryonic fibroblast cells

Tzu-Yu Lin, Hsiu-Han Chan, Shang-Hung Chen, Sailu Sarvagalla, Pai-Sheng Chen, Mohane Selvaraj Coumar, Siao Muk Cheng, Yung-Chieh Chang, Chun-Hui Lin, Euphemia Leung, Chun Hei Antonio Cheung

Autophagy. 2020; 16(7): 1296–1313. Published online 2019 Oct 15. doi: 10.1080/15548627.2019.1671643

PMCID:: PMC7469615

Abstract Article PDF–15M

Select item 736789010.

Ribosome profiling reveals a functional role for autophagy in mRNA translational control

Juliet Goldsmith, Timothy Marsh, Saurabh Asthana, Andrew M. Leidal, Deepthisri Suresh, Adam Olshen, Jayanta Debnath

Commun Biol. 2020; 3: 388. Published online 2020 Jul 17. doi: 10.1038/s42003-020-1090-2

PMCID:: PMC7367890

Abstract Article PDF–3.0M

Select item 717113511.

The endoplasmic reticulum stress-autophagy pathway controls hypothalamic development and energy balance regulation in leptin-deficient neonates

Soyoung Park, Aleek Aintablian, Berengere Coupe, Sebastien G. Bouret

Nat Commun. 2020; 11: 1914. Published online 2020 Apr 20. doi: 10.1038/s41467-020-15624-y

PMCID:: PMC7171135

Abstract Article PDF–4.5M

Select item 710894612.

Autophagic Degradation of NBR1 Restricts Metastatic Outgrowth During Mammary Tumor Progression

Timothy Marsh, Candia M. Kenific, Deepthisri Suresh, Hugo Gonzalez, Eliah R. Shamir, Wenbin Mei, Alexandra Tankka, Andrew M. Leidal, Sandhya Kalavacherla, Kimberly Woo, Zena Werb, Jayanta Debnath

Dev Cell. Author manuscript; available in PMC 2021 Mar 9.

Published in final edited form as: Dev Cell. 2020 Mar 9; 52(5): 591–604.e6. Published online 2020 Feb 20. doi: 10.1016/j.devcel.2020.01.025

PMCID:: PMC7108946

Abstract Article PDF–3.0M

Select item 633346013.

ATG5 is required for B cell polarization and presentation of particulate antigens

Florent Arbogast, Johan Arnold, Philippe Hammann, Lauriane Kuhn, Johana Chicher, Diane Murera, Justine Weishaar, Sylviane Muller, Jean-Daniel Fauny, Frédéric Gros

Autophagy. 2019; 15(2): 280–294. Published online 2018 Sep 22. doi: 10.1080/15548627.2018.1516327

PMCID:: PMC6333460

Abstract Article PDF–2.7M

Select item 607218914.

miR-23a downregulation modulates the inflammatory response by targeting ATG12-mediated autophagy

Xiang Si, Daiyin Cao, Juan Chen, Yao Nie, Zhiyi Jiang, Min-Ying Chen, Jian-Feng Wu, Xiang-Dong Guan

Mol Med Rep. 2018 Aug; 18(2): 1524–1530. Published online 2018 May 29. doi: 10.3892/mmr.2018.9081

PMCID:: PMC6072189

Abstract Article PDF–1.2M

Select item 564017715.

Mir505–3p regulates axonal development via inhibiting the autophagy pathway by targeting Atg12

Kan Yang, Bin Yu, Cheng Cheng, Tianlin Cheng, Bo Yuan, Kai Li, Junhua Xiao, Zilong Qiu, Yuxun Zhou

Autophagy. 2017; 13(10): 1679–1696. Published online 2017 Aug 18. doi: 10.1080/15548627.2017.1353841

PMCID:: PMC5640177

Abstract Article PDF–2.4M

Select item 502349116.

Beige adipocyte maintenance is regulated by autophagy-induced mitochondrial clearance

Svetlana Altshuler-Keylin, Kosaku Shinoda, Yutaka Hasegawa, Kenji Ikeda, Haemin Hong, Qianqian Kang, Yangyu Yang, Rushika M. Perera, Jayanta Debnath, Shingo Kajimura

Cell Metab. Author manuscript; available in PMC 2017 Sep 13.

Published in final edited form as: Cell Metab. 2016 Sep 13; 24(3): 402–419. Published online 2016 Aug 25. doi: 10.1016/j.cmet.2016.08.002