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Items: 18

1.
OpenCell: proteome-scale endogenous tagging enables the cartography of human cellular organization
Nathan H. Cho, Keith C. Cheveralls, Andreas-David Brunner, Kibeom Kim, André C. Michaelis, Preethi Raghavan, Hirofumi Kobayashi, Laura Savy, Jason Y. Li, Hera Canaj, James Y.S. Kim, Edna M. Stewart, Christian Gnann, Frank McCarthy, Joana P. Cabrera, Rachel M. Brunetti, Bryant B. Chhun, Greg Dingle, Marco Y. Hein, Bo Huang, Shalin B. Mehta, Jonathan S. Weissman, Rafael Gómez-Sjöberg, Daniel N. Itzhak, Loic A. Royer, Matthias Mann, Manuel D. Leonetti
Science. Author manuscript; available in PMC 2022 Sep 11.
Published in final edited form as: Science. 2022 Mar 11; 375(6585): eabi6983. Published online 2022 Mar 11. doi: 10.1126/science.abi6983
PMCID:
PMC9119736
AbstractArticlePDF–3.3M
2.
Structures of a deAMPylation complex rationalise the switch between antagonistic catalytic activities of FICD
Luke A. Perera, Steffen Preissler, Nathan R. Zaccai, Sylvain Prévost, Juliette M. Devos, Michael Haertlein, David Ron
Nat Commun. 2021; 12: 5004. Published online 2021 Aug 18. doi: 10.1038/s41467-021-25076-7
PMCID:
PMC8373988
AbstractArticlePDF–5.5M
3.
Investigation of the Detailed AMPylated Reaction Mechanism for the Huntingtin Yeast-Interacting Protein E Enzyme HYPE
Meili Liu, Zhe Huai, Hongwei Tan, Guangju Chen
Int J Mol Sci. 2021 Jul; 22(13): 6999. Published online 2021 Jun 29. doi: 10.3390/ijms22136999
PMCID:
PMC8267892
AbstractArticlePDF–30M
4.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
5.
Specificity of AMPylation of the human chaperone BiP is mediated by TPR motifs of FICD
Joel Fauser, Burak Gulen, Vivian Pogenberg, Christian Pett, Danial Pourjafar-Dehkordi, Christoph Krisp, Dorothea Höpfner, Gesa König, Hartmut Schlüter, Matthias J. Feige, Martin Zacharias, Christian Hedberg, Aymelt Itzen
Nat Commun. 2021; 12: 2426. Published online 2021 Apr 23. doi: 10.1038/s41467-021-22596-0
PMCID:
PMC8065156
AbstractArticlePDF–2.4M
6.
A Fluorescence Polarization-Based High-Throughput Screen to Identify the First Small-Molecule Modulators of the Human Adenylyltransferase HYPE/FICD
Ali Camara, Alyssa George, Evan Hebner, Anika Mahmood, Jashun Paluru, Seema Mattoo
Int J Mol Sci. 2020 Oct; 21(19): 7128. Published online 2020 Sep 27. doi: 10.3390/ijms21197128
PMCID:
PMC7582957
AbstractArticlePDF–4.7M
7.
FICD activity and AMPylation remodelling modulate human neurogenesis
Pavel Kielkowski, Isabel Y. Buchsbaum, Volker C. Kirsch, Nina C. Bach, Micha Drukker, Silvia Cappello, Stephan A. Sieber
Nat Commun. 2020; 11: 517. Published online 2020 Jan 24. doi: 10.1038/s41467-019-14235-6
PMCID:
PMC6981130
AbstractArticlePDF–11M
8.
VIRMA mediates preferential m6A mRNA methylation in 3′UTR and near stop codon and associates with alternative polyadenylation
Yanan Yue, Jun Liu, Xiaolong Cui, Jie Cao, Guanzheng Luo, Zezhou Zhang, Tao Cheng, Minsong Gao, Xiao Shu, Honghui Ma, Fengqin Wang, Xinxia Wang, Bin Shen, Yizhen Wang, Xinhua Feng, Chuan He, Jianzhao Liu
Cell Discov. 2018; 4: 10. Published online 2018 Feb 27. doi: 10.1038/s41421-018-0019-0
PMCID:
PMC5826926
AbstractArticlePDF–2.3M
9.
FICD acts bi-functionally to AMPylate and de-AMPylate the endoplasmic reticulum chaperone BiP
Steffen Preissler, Claudia Rato, Luke Perera, Vladimir Saudek, David Ron
Nat Struct Mol Biol. Author manuscript; available in PMC 2017 Jun 5.
Published in final edited form as: Nat Struct Mol Biol. 2017 Jan; 24(1): 23–29. Published online 2016 Dec 5. doi: 10.1038/nsmb.3337
PMCID:
PMC5221731
AbstractArticlePDF–1.9M
10.
Global Profiling of Huntingtin-associated protein E (HYPE)-Mediated AMPylation through a Chemical Proteomic Approach
Malgorzata Broncel, Remigiusz A. Serwa, Tom D. Bunney, Matilda Katan, Edward W. Tate
Mol Cell Proteomics. 2016 Feb; 15(2): 715–725. Published online 2015 Nov 24. doi: 10.1074/mcp.O115.054429
PMCID:
PMC4739684
AbstractArticlePDF–1.2M
11.
A Novel Link between Fic (Filamentation Induced by cAMP)-mediated Adenylylation/AMPylation and the Unfolded Protein Response
Anwesha Sanyal, Andy J. Chen, Ernesto S. Nakayasu, Cheri S. Lazar, Erica A. Zbornik, Carolyn A. Worby, Antonius Koller, Seema Mattoo
J Biol Chem. 2015 Mar 27; 290(13): 8482–8499. Published online 2015 Jan 19. doi: 10.1074/jbc.M114.618348
PMCID:
PMC4375499
AbstractArticlePDF–4.6M
12.
Crystal Structure of the Human, FIC-Domain Containing Protein HYPE and Implications for Its Functions
Tom D. Bunney, Ambrose R. Cole, Malgorzata Broncel, Diego Esposito, Edward W. Tate, Matilda Katan
Structure. 2014 Dec 2; 22(12): 1831–1843. doi: 10.1016/j.str.2014.10.007
PMCID:
PMC4342408
AbstractArticle
13.
Genome-Wide Data reveals Novel Genes for Methotrexate Response in a Large Cohort of Juvenile Idiopathic Arthritis Cases
Joanna Cobb, Erika Cule, Halima Moncrieffe, Anne Hinks, Simona Ursu, Fiona Patrick, Laura Kassoumeri, Edward Flynn, Maja Bulatovic, Nico Wulffraat, Bertrand van Zelst, Robert de Jonge, Marek Bohm, Pavla Dolezalova, Shashi Hirani, Stanton Newman, Pamela Whitworth, Taunton R Southwood, Childhood Arthritis Response to Medication Study (CHARMS), Childhood Arthritis Prospective Study (CAPS), BSPAR study group, Maria De Iorio, Lucy R Wedderburn, Wendy Thomson
Pharmacogenomics J. Author manuscript; available in PMC 2015 Feb 1.
Published in final edited form as: Pharmacogenomics J. 2014 Aug; 14(4): 356–364. Published online 2014 Apr 8. doi: 10.1038/tpj.2014.3
PMCID:
PMC4091986
AbstractArticlePDF–513K
14.
Novel Genetic Loci Identified for the Pathophysiology of Childhood Obesity in the Hispanic Population
Anthony G. Comuzzie, Shelley A. Cole, Sandra L. Laston, V. Saroja Voruganti, Karin Haack, Richard A. Gibbs, Nancy F. Butte
PLoS One. 2012; 7(12): e51954. Published online 2012 Dec 14. doi: 10.1371/journal.pone.0051954
PMCID:
PMC3522587
AbstractArticlePDF–130K
15.
Toward an understanding of the protein interaction network of the human liver
Jian Wang, Keke Huo, Lixin Ma, Liujun Tang, Dong Li, Xiaobi Huang, Yanzhi Yuan, Chunhua Li, Wei Wang, Wei Guan, Hui Chen, Chaozhi Jin, Junchen Wei, Wanqiao Zhang, Yongsheng Yang, Qiongming Liu, Ying Zhou, Cuili Zhang, Zhihao Wu, Wangxiang Xu, Ying Zhang, Tao Liu, Donghui Yu, Yaping Zhang, Liang Chen, Dewu Zhu, Xing Zhong, Lixin Kang, Xiang Gan, Xiaolan Yu, Qi Ma, Jing Yan, Li Zhou, Zhongyang Liu, Yunping Zhu, Tao Zhou, Fuchu He, Xiaoming Yang
Mol Syst Biol. 2011; 7: 536. Published online 2011 Oct 11. doi: 10.1038/msb.2011.67
Correction in:
Mol Syst Biol. 2017 Dec; 13(12): 965.
PMCID:
PMC3261708
AbstractArticlePDF–2.0M
16.
The Fic domain: A new paradigm for adenylylation
Carolyn A. Worby, Seema Mattoo, Robert P. Kruger, Lynette B. Corbeil, Antonius Koller, Juan C. Mendez, Bereket Zekarias, Cheri Lazar, Jack E. Dixon
Mol Cell. Author manuscript; available in PMC 2010 Apr 10.
Published in final edited form as: Mol Cell. 2009 Apr 10; 34(1): 93. doi: 10.1016/j.molcel.2009.03.008
PMCID:
PMC2820730
AbstractArticlePDF–1.5M
17.
The Secreted Protein Discovery Initiative (SPDI), a Large-Scale Effort to Identify Novel Human Secreted and Transmembrane Proteins: A Bioinformatics Assessment
Hilary F. Clark, Austin L. Gurney, Evangeline Abaya, Kevin Baker, Daryl Baldwin, Jennifer Brush, Jian Chen, Bernard Chow, Clarissa Chui, Craig Crowley, Bridget Currell, Bethanne Deuel, Patrick Dowd, Dan Eaton, Jessica Foster, Christopher Grimaldi, Qimin Gu, Philip E. Hass, Sherry Heldens, Arthur Huang, Hok Seon Kim, Laura Klimowski, Yisheng Jin, Stephanie Johnson, James Lee, Lhney Lewis, Dongzhou Liao, Melanie Mark, Edward Robbie, Celina Sanchez, Jill Schoenfeld, Somasekar Seshagiri, Laura Simmons, Jennifer Singh, Victoria Smith, Jeremy Stinson, Alicia Vagts, Richard Vandlen, Colin Watanabe, David Wieand, Kathryn Woods, Ming-Hong Xie, Daniel Yansura, Sothy Yi, Guoying Yu, Jean Yuan, Min Zhang, Zemin Zhang, Audrey Goddard, William I. Wood, Paul Godowski
Genome Res. 2003 Oct; 13(10): 2265–2270. doi: 10.1101/gr.1293003
Correction in:
Genome Res. 2003 Dec; 13(12): 2759.
PMCID:
PMC403697
AbstractArticlePDF–120K
18.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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