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Items: 1 to 20 of 33

1.
Mapping Brain Gene Coexpression in Daytime Transcriptomes Unveils Diurnal Molecular Networks and Deciphers Perturbation Gene Signatures
Nan Wang, Peter Langfelder, Matthew Stricos, Lalini Ramanathan, Jeffrey B. Richman, Raymond Vaca, Mary Plascencia, Xiaofeng Gu, Shasha Zhang, T. Katherine Tamai, Liguo Zhang, Fuying Gao, Koliane Ouk, Xiang Lu, Leonya Ivanov, Tom Vogt, Qing Richard Lu, A. Jennifer Morton, Christopher Colwell, Jeffrey S. Aaronson, Jim Rosinski, Steve Horvath, X. William Yang
Neuron. Author manuscript; available in PMC 2023 Oct 19.
Published in final edited form as: Neuron. 2022 Oct 19; 110(20): 3318–3338.e9. doi: 10.1016/j.neuron.2022.09.028
PMCID:
PMC9665885
AbstractArticlePDF–4.5M
2.
Spatio-temporal profile of postynaptic interactomes integrates components of complex brain disorders
Jing Li, Wangshu Zhang, Hui Yang, Daniel P. Howrigan, Brent Wilkinson, Tade Souaiaia, Oleg V. Evgrafov, Giulio Genovese, Veronica A. Clementel, Jennifer C. Tudor, Ted Abel, James A. Knowles, Benjamin M. Neale, Kai Wang, Fengzhu Sun, Marcelo P. Coba
Nat Neurosci. Author manuscript; available in PMC 2018 Aug 1.
Published in final edited form as: Nat Neurosci. 2017 Aug; 20(8): 1150–1161. Published online 2017 Jun 26. doi: 10.1038/nn.4594
PMCID:
PMC5645082
AbstractArticlePDF–2.3M
3.
MRG15 is required for pre-mRNA splicing and spermatogenesis
Naoki Iwamori, Kaoru Tominaga, Tetsuya Sato, Kevin Riehle, Tokuko Iwamori, Yasuyuki Ohkawa, Cristian Coarfa, Etsuro Ono, Martin M. Matzuk
Proc Natl Acad Sci U S A. 2016 Sep 13; 113(37): E5408–E5415. Published online 2016 Aug 29. doi: 10.1073/pnas.1611995113
PMCID:
PMC5027415
AbstractArticlePDF–1.8M
4.
The TIP60 complex regulates bivalent chromatin recognition by 53BP1 through direct H4K20me binding and H2AK15 acetylation
Karine Jacquet, Amélie Fradet-Turcotte, Nikita Avvakumov, Jean-Philippe Lambert, Céline Roques, Raj K. Pandita, Eric Paquet, Pauline Herst, Anne-Claude Gingras, Tej K. Pandita, Gaëlle Legube, Yannick Doyon, Daniel Durocher, Jacques Côté
Mol Cell. Author manuscript; available in PMC 2016 May 31.
Published in final edited form as: Mol Cell. 2016 May 5; 62(3): 409–421. doi: 10.1016/j.molcel.2016.03.031
PMCID:
PMC4887106
AbstractArticlePDF–1.4M
5.
Histone Deacetylase 2 (HDAC2) Protein-dependent Deacetylation of Mortality Factor 4-like 1 (MORF4L1) Protein Enhances Its Homodimerization
Yan Chen, Jin Li, Sarah Dunn, Sheng Xiong, Wei Chen, Yutong Zhao, Bill B. Chen, Rama K. Mallampalli, Chunbin Zou
J Biol Chem. 2014 Mar 7; 289(10): 7092–7098. Published online 2014 Jan 22. doi: 10.1074/jbc.M113.527507
Correction in:
J Biol Chem. 2014 Sep 5; 289(36): 24943.
PMCID:
PMC3945369
AbstractArticlePDF–818K
6.
Hdac6 regulates Tip60-p400 function in stem cells
Poshen B Chen, Jui-Hung Hung, Taylor L Hickman, Andrew H Coles, James F Carey, Zhiping Weng, Feixia Chu, Thomas G Fazzio
eLife. 2013; 2: e01557. Published online 2013 Dec 3. doi: 10.7554/eLife.01557
PMCID:
PMC3843111
AbstractArticlePDF–5.7M
7.
A direct physical interaction between Nanog and Sox2 regulates embryonic stem cell self-renewal
Alessia Gagliardi, Nicholas P Mullin, Zi Ying Tan, Douglas Colby, Anastasia I Kousa, Florian Halbritter, Jason T Weiss, Anastasia Felker, Karel Bezstarosti, Rebecca Favaro, Jeroen Demmers, Silvia K Nicolis, Simon R Tomlinson, Raymond A Poot, Ian Chambers
EMBO J. 2013 Aug 14; 32(16): 2231–2247. Published online 2013 Jul 26. doi: 10.1038/emboj.2013.161
PMCID:
PMC3746198
AbstractArticlePDF–2.9M
8.
Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration
Stephen Lumayag, Caroline E. Haldin, Nicola J. Corbett, Karl J. Wahlin, Colleen Cowan, Sanja Turturro, Peter E. Larsen, Beatrix Kovacs, P. Dane Witmer, David Valle, Donald J. Zack, Daniel A. Nicholson, Shunbin Xu
Proc Natl Acad Sci U S A. 2013 Feb 5; 110(6): E507–E516. Published online 2013 Jan 22. doi: 10.1073/pnas.1212655110
PMCID:
PMC3568372
AbstractArticlePDF–2.1M
9.
PRC1 and PRC2 Are Not Required for Targeting of H2A.Z to Developmental Genes in Embryonic Stem Cells
Robert S. Illingworth, Catherine H. Botting, Graeme R. Grimes, Wendy A. Bickmore, Ragnhild Eskeland
PLoS One. 2012; 7(4): e34848. Published online 2012 Apr 9. doi: 10.1371/journal.pone.0034848
PMCID:
PMC3322156
AbstractArticlePDF–1.5M
10.
Vezf1 protein binding sites genome-wide are associated with pausing of elongating RNA polymerase II
Humaira Gowher, Kevin Brick, R. Daniel Camerini-Otero, Gary Felsenfeld
Proc Natl Acad Sci U S A. 2012 Feb 14; 109(7): 2370–2375. Published online 2012 Jan 30. doi: 10.1073/pnas.1121538109
PMCID:
PMC3289347
AbstractArticlePDF–954K
11.
Loss of the Methyl Lysine Effector Protein PHF20 Impacts the Expression of Genes Regulated by the Lysine Acetyltransferase MOF
Aimee I. Badeaux, Yanzhong Yang, Kim Cardenas, Vidyasiri Vemulapalli, Kaifu Chen, Donna Kusewitt, Ellen Richie, Wei Li, Mark T. Bedford
J Biol Chem. 2012 Jan 2; 287(1): 429–437. Published online 2011 Nov 9. doi: 10.1074/jbc.M111.271163
PMCID:
PMC3249094
AbstractArticlePDF–2.1M
12.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
13.
Chfr and RNF8 synergistically regulate ATM activation
Jiaxue Wu, Yibin Chen, Lin-Yu Lu, Yipin Wu, Michelle T. Paulsen, Mats Ljungman, David O Ferguson, Xiaochun Yu
Nat Struct Mol Biol. Author manuscript; available in PMC 2012 Jan 1.
Published in final edited form as: Nat Struct Mol Biol. 2011 Jul; 18(7): 761–768. Published online 2011 Jun 26. doi: 10.1038/nsmb.2078
PMCID:
PMC3130800
AbstractArticlePDF–2.4M
14.
Loss of the chromatin regulator MRG15 limits neural stem/progenitor cell proliferation via increased expression of the p21 Cdk inhibitor
Meizhen Chen, Olivia M. Pereira-Smith, Kaoru Tominaga
Stem Cell Res. Author manuscript; available in PMC 2012 Jul 1.
Published in final edited form as: Stem Cell Res. 2011 Jul; 7(1): 75–88. Published online 2011 Apr 25. doi: 10.1016/j.scr.2011.04.002
PMCID:
PMC3130620
AbstractArticlePDF–2.0M
15.
A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58
Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara
Dev Cell. Author manuscript; available in PMC 2011 Jun 7.
Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011
PMCID:
PMC3110151
AbstractArticlePDF–2.0M
16.
KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription
Liangqi Xie, Carl Pelz, Wensi Wang, Amir Bashar, Olga Varlamova, Sean Shadle, Soren Impey
EMBO J. 2011 Apr 20; 30(8): 1473–1484. Published online 2011 Mar 29. doi: 10.1038/emboj.2011.91
PMCID:
PMC3102288
AbstractArticlePDF–1.0M
17.
A Novel Mammalian Complex Containing Sin3B Mitigates Histone Acetylation and RNA Polymerase II Progression within Transcribed Loci
Petar Jelinic, Jessica Pellegrino, Gregory David
Mol Cell Biol. 2011 Jan; 31(1): 54–62. Published online 2010 Nov 1. doi: 10.1128/MCB.00840-10
PMCID:
PMC3019848
AbstractArticlePDF–1010K
18.
MRG15, a component of HAT and HDAC complexes, is essential for proliferation and differentiation of neural precursor cells
Meizhen Chen, Masumi Takano-Maruyama, Olivia M. Pereira-Smith, Gary O. Gaufo, Kaoru Tominaga
J Neurosci Res. Author manuscript; available in PMC 2010 Aug 2.
Published in final edited form as: J Neurosci Res. 2009 May 15; 87(7): 1522–1531. doi: 10.1002/jnr.21976
PMCID:
PMC2913448
AbstractArticlePDF–2.2M
19.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
20.
Mrg15 null and heterozygous mouse embryonic fibroblasts exhibit DNA repair defects post exposure to gamma ionizing radiation
Sandra N. Garcia, Bhakti M. Kirtane, Andrej J. Podlutsky, Olivia M. Pereira-Smith, Kaoru Tominaga
FEBS Lett. Author manuscript; available in PMC 2008 Nov 13.
Published in final edited form as: FEBS Lett. 2007 Nov 13; 581(27): 5275–5281. Published online 2007 Oct 18. doi: 10.1016/j.febslet.2007.10.017
PMCID:
PMC2132445
AbstractArticlePDF–974K

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