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Select item 92098111.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 86938602.

Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation

Anne Schreiber, Ben C. Collins, Colin Davis, Radoslav I. Enchev, Angie Sedra, Rocco D’Antuono, Ruedi Aebersold, Matthias Peter

Mol Cell. 2021 Dec 16; 81(24): 5066–5081.e10. doi: 10.1016/j.molcel.2021.10.024

PMCID:: PMC8693860

Abstract Article

Select item 77515033.

Atg11 is required for initiation of glucose starvation-induced autophagy

Weijing Yao, Yixing Li, Liming Wu, Choufei Wu, Yi Zhang, Jing Liu, Zhiyong He, Xiaoyong Wu, Chenjun Lu, Liefeng Wang, Huiming Zhong, Zhi Hong, Shiming Xu, Wei Liu, Cong Yi

Autophagy. 2020; 16(12): 2206–2218. Published online 2020 Feb 3. doi: 10.1080/15548627.2020.1719724

PMCID:: PMC7751503

Abstract Article PDF–4.5M

Select item 71382224.

DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae

Ying Zhang, Yubin Xie, Wenzhong Liu, Wankun Deng, Di Peng, Chenwei Wang, Haodong Xu, Chen Ruan, Yongjie Deng, Yaping Guo, Chenjun Lu, Cong Yi, Jian Ren, Yu Xue

Autophagy. 2020; 16(4): 626–640. Published online 2019 Jun 20. doi: 10.1080/15548627.2019.1632622

PMCID:: PMC7138222

Abstract Article PDF–8.0M

Select item 66872015.

Atg11 tethers Atg9 vesicles to initiate selective autophagy

Nena Matscheko, Peter Mayrhofer, Yijian Rao, Viola Beier, Thomas Wollert

PLoS Biol. 2019 Jul; 17(7): e3000377. Published online 2019 Jul 29. doi: 10.1371/journal.pbio.3000377

PMCID:: PMC6687201

Abstract Article PDF–2.3M

Select item 65481306.

Rab5-dependent autophagosome closure by ESCRT

Fan Zhou, Zulin Wu, Mengzhu Zhao, Rakhilya Murtazina, Juan Cai, Ao Zhang, Rui Li, Dan Sun, Wenjing Li, Lei Zhao, Qunli Li, Jing Zhu, Xiaoxia Cong, Yiting Zhou, Zhiping Xie, Valeriya Gyurkovska, Liuju Li, Xiaoshuai Huang, Yanhong Xue, Liangyi Chen, Hui Xu, Haiqian Xu, Yongheng Liang, Nava Segev

J Cell Biol. 2019 Jun 28; 218(6): 1908–1927. Published online 2019 Apr 22. doi: 10.1083/jcb.201811173

PMCID:: PMC6548130

Abstract Article PDF–5.0M

Select item 64052437.

Two distinct mechanisms target the autophagy-related E3 complex to the pre-autophagosomal structure

Kumi Harada, Tetsuya Kotani, Hiromi Kirisako, Machiko Sakoh-Nakatogawa, Yu Oikawa, Yayoi Kimura, Hisashi Hirano, Hayashi Yamamoto, Yoshinori Ohsumi, Hitoshi Nakatogawa

eLife. 2019; 8: e43088. Published online 2019 Feb 27. doi: 10.7554/eLife.43088

PMCID:: PMC6405243

Abstract Article PDF–2.8M

Select item 60700028.

The exoribonuclease Xrn1 is a post-transcriptional negative regulator of autophagy

Elizabeth Delorme-Axford, Emma Abernathy, Nicholas J. Lennemann, Amélie Bernard, Aileen Ariosa, Carolyn B. Coyne, Karla Kirkegaard, Daniel J. Klionsky

Autophagy. 2018; 14(5): 898–912. Published online 2018 Mar 21. doi: 10.1080/15548627.2018.1441648

PMCID:: PMC6070002

Abstract Article PDF–1.2M

Select item 58718719.

Structural characterization of the Saccharomyces cerevisiae autophagy regulatory complex Atg17-Atg31-Atg29

Leon H Chew, Dheva Setiaputra, Daniel J Klionsky, Calvin K Yip

Autophagy. Author manuscript; available in PMC 2018 Mar 28.

Published in final edited form as: Autophagy. 2013 Oct; 9(10): 1467–1474. Published online 2013 Aug 5. doi: 10.4161/auto.25687

PMCID:: PMC5871871

Abstract Article PDF–1.1M

Select item 576535910.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566950011.

Scaffolding the cup-shaped double membrane in autophagy

Amir Houshang Bahrami, Mary G. Lin, Xuefeng Ren, James H. Hurley, Gerhard Hummer

PLoS Comput Biol. 2017 Oct; 13(10): e1005817. Published online 2017 Oct 24. doi: 10.1371/journal.pcbi.1005817

PMCID:: PMC5669500

Abstract Article PDF–16M

Select item 566188512.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025413.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 559580814.

Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment

Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel

Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7

Correction in:: Sci Rep. 2018; 8: 2513.

PMCID:: PMC5595808

Abstract Article PDF–5.9M

Select item 505508315.

Functional Metabolomics Describes the Yeast Biosynthetic Regulome

Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser

Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007

PMCID:: PMC5055083

Abstract Article PDF–3.9M

Select item 486983516.

One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy

Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner

Nat Methods. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795