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Select item 100339371.

Assessment of community efforts to advance network-based prediction of protein–protein interactions

Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu

Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7

PMCID:: PMC10033937

Abstract Article PDF–1.5M

Select item 97295242.

Sclerosing Paragangliomas: Correlations of Histological Features with Patients’ Genotype and Vesicular Monoamine Transporter Expression

Angela Pucci, Alessandra Bacca, Ivana Barravecchia, Iosè Di Stefano, Beatrice Belgio, Daniele Lorenzini, Liborio Torregrossa, Serena Chiacchio, Caterina Congregati, Gabriele Materazzi, Mauro Ferrari, Debora Angeloni, Giampaolo Bernini, Fulvio Basolo

Head Neck Pathol. 2022 Dec; 16(4): 998–1011. Published online 2022 May 7. doi: 10.1007/s12105-022-01455-4

PMCID:: PMC9729524

Abstract Article PDF–1.8M

Select item 81650303.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 71699834.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 68891915.

Human-specific mutations in VMAT1 confer functional changes and multi-directional evolution in the regulation of monoamine circuits

Daiki X. Sato, Yuu Ishii, Tomoaki Nagai, Kazumasa Ohashi, Masakado Kawata

BMC Evol Biol. 2019; 19: 220. Published online 2019 Dec 2. doi: 10.1186/s12862-019-1543-8

PMCID:: PMC6889191

Abstract Article PDF–3.5M

Select item 63795946.

Dysmorphic contribution of neurotransmitter and neuroendocrine system polymorphisms to subtherapeutic mood states

Irene Gonzalez, Rocio Polvillo, Maximiliano Ruiz‐Galdon, Armando Reyes‐Engel, Jose Luis Royo

Brain Behav. 2019 Feb; 9(2): e01140. Published online 2019 Jan 17. doi: 10.1002/brb3.1140

PMCID:: PMC6379594

Abstract Article PDF–550K

Select item 61995727.

Expression of the Vesicular Monoamine Transporter Gene Solute Carrier Family 18 Member 1 (SLC18A1) in Lung Cancer

STEVEN LEHRER, PETER H RHEINSTEIN

Cancer Genomics Proteomics. 2018 Sep-Oct; 15(5): 387–393. Published online 2018 Sep 3. doi: 10.21873/cgp.20097

PMCID:: PMC6199572

Abstract Article PDF–321K

Select item 60858948.

Dopamine gene methylation patterns are associated with obesity markers and carbohydrate intake

Omar Ramos‐Lopez, Jose I. Riezu‐Boj, Fermin I. Milagro, J. Alfredo Martinez, MENA Project

Brain Behav. 2018 Aug; 8(8): e01017. Published online 2018 Jul 11. doi: 10.1002/brb3.1017

PMCID:: PMC6085894

Abstract Article PDF–1022K

Select item 55316119.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 496627510.

A Functional Vesicular Monoamine Transporter 1 (VMAT1) Gene Variant Is Associated with Affect and the Prevalence of Anxiety, Affective, and Alcohol Use Disorders in a Longitudinal Population-Representative Birth Cohort Study

Mariliis Vaht, Evelyn Kiive, Toomas Veidebaum, Jaanus Harro

Int J Neuropsychopharmacol. 2016 Jul; 19(7): pyw013. Published online 2016 Feb 9. doi: 10.1093/ijnp/pyw013

PMCID:: PMC4966275

Abstract Article PDF–982K

Select item 473340011.

Vesicular Monoamine Transporter Protein Expression Correlates with Clinical Features, Tumor Biology, and MIBG Avidity in Neuroblastoma: A Report from the Children's Oncology Group

William Temple, Lori Mendelsohn, Grace E. Kim, Erin Nekritz, W. Clay Gustafson, Lawrence Lin, Kathy Giacomini, Arlene Naranjo, Collin Van Ryn, Gregory A. Yanik, Susan G. Kreissman, Michael Hogarty, Katherine K. Matthay, Steven G. DuBois

Eur J Nucl Med Mol Imaging. Author manuscript; available in PMC 2017 Mar 1.

Published in final edited form as: Eur J Nucl Med Mol Imaging. 2016 Mar; 43(3): 474–481. Published online 2015 Sep 4. doi: 10.1007/s00259-015-3179-2

Correction in:: Eur J Nucl Med Mol Imaging. 2016 Jul; 43(7): 1396.

PMCID:: PMC4733400

Abstract Article PDF–1.4M

Select item 461721112.

The BioPlex Network: A Systematic Exploration of the Human Interactome

Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2016 Jul 16.

Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043

PMCID:: PMC4617211

Abstract Article PDF–2.2M

Select item 431187713.

Functional genetic variants in the vesicular monoamine transporter 1 (VMAT1) modulate emotion processing

Falk W. Lohoff, Rachel Hodge, Sneha Narasimhan, Aleksandra Nall, Thomas N. Ferraro, Brian J. Mickey, Mary M. Heitzeg, Scott A. Langenecker, Jon-Kar Zubieta, Ryan Bogdan, Yuliya S. Nikolova, Emily Drabant, Ahmad R. Hariri, Laura Bevilacqua, David Goldman, Glenn A. Doyle

Mol Psychiatry. Author manuscript; available in PMC 2015 Jan 30.

Published in final edited form as: Mol Psychiatry. 2014 Jan; 19(1): 129–139. Published online 2013 Jan 22. doi: 10.1038/mp.2012.193

PMCID:: PMC4311877

Abstract Article PDF–1.0M

Select item 406207114.

Amerindian-specific regions under positive selection harbour new lipid variants in Latinos

Arthur Ko, Rita M. Cantor, Daphna Weissglas-Volkov, Elina Nikkola, Prasad M. V. Linga Reddy, Janet S. Sinsheimer, Bogdan Pasaniuc, Robert Brown, Marcus Alvarez, Alejandra Rodriguez, Rosario Rodriguez-Guillen, Ivette C. Bautista, Olimpia Arellano-Campos, Linda L. Muñoz-Hernández, Veikko Salomaa, Jaakko Kaprio, Antti Jula, Matti Jauhiainen, Markku Heliövaara, Olli Raitakari, Terho Lehtimäki, Johan G. Eriksson, Markus Perola, Kirk E. Lohmueller, Niina Matikainen, Marja-Riitta Taskinen, Maribel Rodriguez-Torres, Laura Riba, Teresa Tusie-Luna, Carlos A. Aguilar-Salinas, Päivi Pajukanta

Nat Commun. 2014 Jun 2; 5: 3983. Published online 2014 Jun 2. doi: 10.1038/ncomms4983

PMCID:: PMC4062071

Abstract Article PDF–821K

Select item 391760515.

Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci

Daphna Weissglas-Volkov, Carlos A. Aguilar-Salinas, Elina Nikkola, Kerry A. Deere, Ivette Cruz-Bautista, Olimpia Arellano-Campos, Linda Liliana Muñoz-Hernandez, Lizeth Gomez-Munguia, Maria Luisa Ordoñez-Sánchez, Prasad MV Linga Reddy, Aldons J. Lusis, Niina Matikainen, Marja-Riitta Taskinen, Laura Riba, Rita M. Cantor, Janet S. Sinsheimer, Teresa Tusie-Luna, Päivi Pajukanta

J Med Genet. Author manuscript; available in PMC 2014 May 1.

Published in final edited form as: J Med Genet. 2013 May; 50(5): 298–308. Published online 2013 Mar 15. doi: 10.1136/jmedgenet-2012-101461

PMCID:: PMC3917605

Abstract Article PDF–575K

Select item 317805916.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 298649917.

Pharmacogenetics of antipsychotic response in the CATIE trial: a candidate gene analysis

Anna C Need, Richard SE Keefe, Dongliang Ge, Iris Grossman, Sam Dickson, Joseph P McEvoy, David B Goldstein

Eur J Hum Genet. 2009 Jul; 17(7): 946–957. Published online 2009 Jan 21. doi: 10.1038/ejhg.2008.264

PMCID:: PMC2986499

Abstract Article PDF–172K

Select item 296315418.

Association Study of 182 Candidate Genes in Anorexia Nervosa

Andrea Poyastro Pinheiro, Cynthia M. Bulik, Laura M. Thornton, Patrick F. Sullivan, Tammy L. Root, Cinnamon S. Bloss, Wade H. Berrettini, Nicholas J. Schork, Walter H. Kaye, Andrew W. Bergen, Pierre Magistretti, Harry Brandt, Steve Crawford, Scott Crow, Manfred M. Fichter, David Goldman, Katherine A. Halmi, Craig Johnson, Allan S. Kaplan, Pamela K. Keel, Kelly L. Klump, Maria La Via, James E. Mitchell, Michael Strober, Alessandro Rotondo, Janet Treasure, D. Blake Woodside

Am J Med Genet B Neuropsychiatr Genet. Author manuscript; available in PMC 2010 Oct 25.

Published in final edited form as: Am J Med Genet B Neuropsychiatr Genet. 2010 Jul; 153B(5): 1070–1080. doi: 10.1002/ajmg.b.31082

PMCID:: PMC2963154

Abstract Article PDF–315K

Select item 288885619.

Novel loci for major depression identified by genome-wide association study of STAR*D and meta-analysis of three studies

SI Shyn, J Shi, JB Kraft, JB Potash, JA Knowles, MM Weissman, HA Garriock, JS Yokoyama, PJ McGrath, EJ Peters, WA Scheftner, W Coryell, WB Lawson, D Jancic, PV Gejman, AR Sanders, P Holmans, SL Slager, DF Levinson, SP Hamilton

Mol Psychiatry. Author manuscript; available in PMC 2011 Aug 1.

Published in final edited form as: Mol Psychiatry. 2011 Feb; 16(2): 202–215. Published online 2009 Dec 29. doi: 10.1038/mp.2009.125

PMCID:: PMC2888856

Abstract Article PDF–1022K

Select item 268707720.

Genome-wide association analysis of metabolic traits in a birth cohort from a founder population

Chiara Sabatti, Susan K Service, Anna-Liisa Hartikainen, Anneli Pouta, Samuli Ripatti, Jae Brodsky, Chris G Jones, Noah A Zaitlen, Teppo Varilo, Marika Kaakinen, Ulla Sovio, Aimo Ruokonen, Jaana Laitinen, Eveliina Jakkula, Lachlan Coin, Clive Hoggart, Andrew Collins, Hannu Turunen, Stacey Gabriel, Paul Elliot, Mark I McCarthy, Mark J Daly, Marjo-Riitta Järvelin, Nelson B Freimer, Leena Peltonen

Nat Genet. Author manuscript; available in PMC 2009 Jul 1.

Published in final edited form as: Nat Genet. 2009 Jan; 41(1): 35–46. Published online 2008 Dec 7. doi: 10.1038/ng.271