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Items: 1 to 20 of 32

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
The mitochondrial iron exporter genes MMT1 and MMT2 in yeast are transcriptionally regulated by Aft1 and Yap1
Liangtao Li, Sophie Bertram, Jerry Kaplan, Xuan Jia, Diane M. Ward
J Biol Chem. 2020 Feb 7; 295(6): 1716–1726. Published online 2020 Jan 2. doi: 10.1074/jbc.RA119.011154
PMCID:
PMC7008362
AbstractArticlePDF–2.9M
4.
The Conserved CDC Motif in the Yeast Iron Regulator Aft2 Mediates Iron-Sulfur Cluster Exchange and Protein-Protein Interactions with Grx3 and Bol2
Haoran Li, Caryn E. Outten
J Biol Inorg Chem. Author manuscript; available in PMC 2020 Sep 6.
Published in final edited form as: J Biol Inorg Chem. 2019 Sep; 24(6): 809–815. Published online 2019 Sep 6. doi: 10.1007/s00775-019-01705-x
PMCID:
PMC6800183
AbstractArticlePDF–853K
5.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
6.
Discovery of a Novel Dibromoquinoline Compound Exhibiting Potent Antifungal and Antivirulence Activity that Targets Metal ion Homeostasis
Haroon Mohammad, Nehal H. Elghazawy, Hassan E. Eldesouky, Youssef A. Hegazy, Waleed Younis, Larisa Avrimova, Tony Hazbun, Reem K. Arafa, Mohamed N. Seleem
ACS Infect Dis. Author manuscript; available in PMC 2018 Sep 9.
Published in final edited form as: ACS Infect Dis. 2018 Mar 9; 4(3): 403–414. Published online 2018 Feb 2. doi: 10.1021/acsinfecdis.7b00215
PMCID:
PMC5903683
AbstractArticlePDF–1.0M
7.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
8.
Dihydropyrimidine-Thiones and Clioquinol Synergize To Target β-Amyloid Cellular Pathologies through a Metal-Dependent Mechanism
Daniel F. Tardiff, Lauren E. Brown, Xiaohui Yan, Richard Trilles, Nathan T. Jui, M. Inmaculada Barrasa, Kim A. Caldwell, Guy A. Caldwell, Scott E. Schaus, Susan Lindquist
ACS Chem Neurosci. Author manuscript; available in PMC 2018 Sep 20.
Published in final edited form as: ACS Chem Neurosci. 2017 Sep 20; 8(9): 2039–2055. Published online 2017 Jul 12. doi: 10.1021/acschemneuro.7b00187
PMCID:
PMC5705239
AbstractArticlePDF–2.1M
9.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
10.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
11.
Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment
Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel
Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7
Correction in:
Sci Rep. 2018; 8: 2513.
PMCID:
PMC5595808
AbstractArticlePDF–5.9M
12.
The m6A methyltransferase Ime4 epitranscriptionally regulates triacylglycerol metabolism and vacuolar morphology in haploid yeast cells
Pradeep Kumar Yadav, Ram Rajasekharan
J Biol Chem. 2017 Aug 18; 292(33): 13727–13744. Published online 2017 Jun 27. doi: 10.1074/jbc.M117.783761
PMCID:
PMC5566527
AbstractArticlePDF–4.8M
13.
Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library
Ji-Young Youn, Helena Friesen, Alex N. Nguyen Ba, Wendy Liang, Vincent Messier, Mike J. Cox, Alan M. Moses, Brenda Andrews
G3 (Bethesda) 2017 Mar; 7(3): 911–921. Published online 2017 Jan 22. doi: 10.1534/g3.116.038471
PMCID:
PMC5345721
AbstractArticlePDF–1.6M
14.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
15.
The yeast Aft2 transcription factor determines selenite toxicity by controlling the low affinity phosphate transport system
María Pérez-Sampietro, Albert Serra-Cardona, David Canadell, Celia Casas, Joaquín Ariño, Enrique Herrero
Sci Rep. 2016; 6: 32836. Published online 2016 Sep 13. doi: 10.1038/srep32836
PMCID:
PMC5020356
AbstractArticlePDF–1.7M
16.
Misregulation of a DDHD Domain-containing Lipase Causes Mitochondrial Dysfunction in Yeast
Pradeep Kumar Yadav, Ram Rajasekharan
J Biol Chem. 2016 Aug 26; 291(35): 18562–18581. Published online 2016 Jul 8. doi: 10.1074/jbc.M116.733378
PMCID:
PMC5000100
AbstractArticlePDF–3.4M
17.
The late‐annotated small ORF LSO1 is a target gene of the iron regulon of Saccharomyces cerevisiae
Xiuxiang An, Caiguo Zhang, Robert A. Sclafani, Paul Seligman, Mingxia Huang
Microbiologyopen. 2015 Dec; 4(6): 941–951. Published online 2015 Oct 8. doi: 10.1002/mbo3.303
PMCID:
PMC4694146
AbstractArticlePDF–324K
18.
Conserved electron donor complex Dre2–Tah18 is required for ribonucleotide reductase metallocofactor assembly and DNA synthesis
Yan Zhang, Haoran Li, Caiguo Zhang, Xiuxiang An, Lili Liu, JoAnne Stubbe, Mingxia Huang
Proc Natl Acad Sci U S A. 2014 Apr 29; 111(17): E1695–E1704. Published online 2014 Apr 14. doi: 10.1073/pnas.1405204111
PMCID:
PMC4035922
AbstractArticlePDF–1.8M
19.
Molecular mechanism and structure of the Saccharomyces cerevisiae iron regulator Aft2
Catherine B. Poor, Seraphine V. Wegner, Haoran Li, Adrienne C. Dlouhy, Jonathan P. Schuermann, Ruslan Sanishvili, James R. Hinshaw, Pamela J. Riggs-Gelasco, Caryn E. Outten, Chuan He
Proc Natl Acad Sci U S A. 2014 Mar 18; 111(11): 4043–4048. Published online 2014 Mar 3. doi: 10.1073/pnas.1318869111
PMCID:
PMC3964038
AbstractArticlePDF–1.2M
20.
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis
Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman
Cell. Author manuscript; available in PMC 2014 Jan 17.
Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001
PMCID:
PMC3553497
AbstractArticlePDF–5.1M

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