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Items: 1 to 20 of 38

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
3.
Metabolic constraints drive self-organization of specialized cell groups
Sriram Varahan, Adhish Walvekar, Vaibhhav Sinha, Sandeep Krishna, Sunil Laxman
eLife. 2019; 8: e46735. Published online 2019 Jun 26. doi: 10.7554/eLife.46735
Correction in:
eLife. 2020; 9: e65803.
PMCID:
PMC6658198
AbstractArticlePDF–2.8M
4.
Laboratory Evolution of a Saccharomyces cerevisiae × S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions
Arthur R. Gorter de Vries, Maaike A. Voskamp, Aafke C. A. van Aalst, Line H. Kristensen, Liset Jansen, Marcel van den Broek, Alex N. Salazar, Nick Brouwers, Thomas Abeel, Jack T. Pronk, Jean-Marc G. Daran
Front Genet. 2019; 10: 242. Published online 2019 Mar 29. doi: 10.3389/fgene.2019.00242
PMCID:
PMC6455053
AbstractArticlePDF–3.3M
5.
Transition between fermentation and respiration determines history-dependent behavior in fluctuating carbon sources
Bram Cerulus, Abbas Jariani, Gemma Perez-Samper, Lieselotte Vermeersch, Julian MJ Pietsch, Matthew M Crane, Aaron M New, Brigida Gallone, Miguel Roncoroni, Maria C Dzialo, Sander K Govers, Jhana O Hendrickx, Eva Galle, Maarten Coomans, Pieter Berden, Sara Verbandt, Peter S Swain, Kevin J Verstrepen
eLife. 2018; 7: e39234. Published online 2018 Oct 9. doi: 10.7554/eLife.39234
PMCID:
PMC6211830
AbstractArticlePDF–4.5M
6.
Synergy between the small intrinsically disordered protein Hsp12 and trehalose sustain viability after severe desiccation
Skylar Xantus Kim, Gamze Çamdere, Xuchen Hu, Douglas Koshland, Hugo Tapia
eLife. 2018; 7: e38337. Published online 2018 Jul 16. doi: 10.7554/eLife.38337
PMCID:
PMC6054528
AbstractArticlePDF–1.8M
7.
Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs
Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen
PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319
PMCID:
PMC5922528
AbstractArticlePDF–7.1M
8.
A 2-Deoxyglucose-Resistant Mutant of Saccharomyces cerevisiae Shows Enhanced Maltose Fermentative Ability by the Activation of MAL Genes
Yoshitake Orikasa, Dai Mikumo, Takuji Ohwada
Foods. 2018 Apr; 7(4): 52. Published online 2018 Apr 1. doi: 10.3390/foods7040052
PMCID:
PMC5920417
AbstractArticlePDF–965K
9.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
10.
Proton-solute coupling mechanism of the maltose transporter from Saccharomyces cerevisiae
Ryan Henderson, Bert Poolman
Sci Rep. 2017; 7: 14375. Published online 2017 Oct 30. doi: 10.1038/s41598-017-14438-1
PMCID:
PMC5662749
AbstractArticlePDF–3.6M
11.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
12.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
13.
Characterizing the in vivo role of trehalose in Saccharomyces cerevisiae using the AGT1 transporter
Patrick A. Gibney, Ariel Schieler, Jonathan C. Chen, Joshua D. Rabinowitz, David Botstein
Proc Natl Acad Sci U S A. 2015 May 12; 112(19): 6116–6121. Published online 2015 Apr 27. doi: 10.1073/pnas.1506289112
PMCID:
PMC4434743
AbstractArticlePDF–1.3M
14.
Increasing intracellular trehalose is sufficient to confer desiccation tolerance to Saccharomyces cerevisiae
Hugo Tapia, Lindsey Young, Douglas Fox, Carolyn R. Bertozzi, Douglas Koshland
Proc Natl Acad Sci U S A. 2015 May 12; 112(19): 6122–6127. Published online 2015 Apr 27. doi: 10.1073/pnas.1506415112
PMCID:
PMC4434740
AbstractArticlePDF–854K
15.
Deconstructing the genetic basis of spent sulphite liquor tolerance using deep sequencing of genome-shuffled yeast
Dominic Pinel, David Colatriano, Heng Jiang, Hung Lee, Vincent JJ Martin
Biotechnol Biofuels. 2015; 8: 53. Published online 2015 Mar 31. doi: 10.1186/s13068-015-0241-z
PMCID:
PMC4393574
AbstractArticlePDF–1.2M
16.
Improved use of a public good selects for the evolution of undifferentiated multicellularity
John H Koschwanez, Kevin R Foster, Andrew W Murray
eLife. 2013; 2: e00367. Published online 2013 Apr 2. doi: 10.7554/eLife.00367
PMCID:
PMC3614033
AbstractArticlePDF–3.1M
17.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
18.
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews
Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111
PMCID:
PMC3317160
AbstractArticlePDF–998K
19.
Genome-wide assessment of the carriers involved in the cellular uptake of drugs: a model system in yeast
Karin Lanthaler, Elizabeth Bilsland, Paul D Dobson, Harry J Moss, Pınar Pir, Douglas B Kell, Stephen G Oliver
BMC Biol. 2011; 9: 70. Published online 2011 Oct 24. doi: 10.1186/1741-7007-9-70
PMCID:
PMC3280192
AbstractArticlePDF–1.0M
20.
An integrated approach to characterize genetic interaction networks in yeast metabolism
Balázs Szappanos, Károly Kovács, Béla Szamecz, Frantisek Honti, Michael Costanzo, Anastasia Baryshnikova, Gabriel Gelius-Dietrich, Martin J. Lercher, Márk Jelasity, Chad L. Myers, Brenda J. Andrews, Charles Boone, Stephen G. Oliver, Csaba Pál, Balázs Papp
Nat Genet. Author manuscript; available in PMC 2012 Jan 1.
Published in final edited form as: Nat Genet. 2011 Jul; 43(7): 656–662. Published online 2011 May 29. doi: 10.1038/ng.846
PMCID:
PMC3125439
AbstractArticlePDF–2.5M

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