PMC Links for GEO Profiles (Select 129172047) - PMC

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 87596475.

Gene by Environment Interactions reveal new regulatory aspects of signaling network plasticity

Matthew D. Vandermeulen, Paul J. Cullen

PLoS Genet. 2022 Jan; 18(1): e1009988. Published online 2022 Jan 4. doi: 10.1371/journal.pgen.1009988

PMCID:: PMC8759647

Abstract Article PDF–4.2M

Select item 73864336.

Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell

Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin, Kerry Andrusiak, Anna Kobylianski, Zhijian Li, Michael Costanzo, Munira A Basrai, Guri Giaever, Corey Nislow, Brenda Andrewa, Charles Boone

Nat Biotechnol. Author manuscript; available in PMC 2020 Jul 28.

Published in final edited form as: Nat Biotechnol. 2011 May 15; 29(6): 505–511. Published online 2011 May 15. doi: 10.1038/nbt.1855

PMCID:: PMC7386433

Abstract Article PDF–1.0M

Select item 72731777.

Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions

Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch

Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680

PMCID:: PMC7273177

Abstract Article

Select item 71748468.

Regulation of intrinsic polarity establishment by a differentiation-type MAPK pathway in S. cerevisiae

Aditi Prabhakar, Jacky Chow, Alan J. Siegel, Paul J. Cullen

J Cell Sci. 2020 Apr 1; 133(7): jcs241513. Published online 2020 Apr 14. doi: 10.1242/jcs.241513

PMCID:: PMC7174846

Abstract Article

Select item 62185629.

Conserved Pbp1/Ataxin-2 regulates retrotransposon activity and connects polyglutamine expansion-driven protein aggregation to lifespan-controlling rDNA repeats

Lauren A. Ostrowski, Amanda C. Hall, Kirk J. Szafranski, Roxanne Oshidari, Karan J. Abraham, Janet N. Y. Chan, Christian Krustev, Kevin Zhang, Ashley Wang, Yupeng Liu, Ru Guo, Karim Mekhail

Commun Biol. 2018; 1: 187. Published online 2018 Nov 5. doi: 10.1038/s42003-018-0187-3

PMCID:: PMC6218562

Abstract Article PDF–2.3M

Select item 621571310.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 611272011.

Preferences in a trait decision determined by transcription factor variants

Michael W. Dorrity, Josh T. Cuperus, Jolie A. Carlisle, Stanley Fields, Christine Queitsch

Proc Natl Acad Sci U S A. 2018 Aug 21; 115(34): E7997–E8006. Published online 2018 Aug 1. doi: 10.1073/pnas.1805882115

PMCID:: PMC6112720

Abstract Article PDF–1.4M

Select item 600458112.

Analysis of the thresholds for transcriptional activation by the yeast MAP kinases Fus3 and Kss1

Matthew J. Winters, Peter M. Pryciak

Mol Biol Cell. 2018 Mar 1; 29(5): 669–682. doi: 10.1091/mbc.E17-10-0578

PMCID:: PMC6004581

Abstract Article PDF–2.5M

Select item 594606313.

Genomewide mechanisms of chronological longevity by dietary restriction in budding yeast

Sergio E. Campos, J. Abraham Avelar‐Rivas, Erika Garay, Alejandro Juárez‐Reyes, Alexander DeLuna

Aging Cell. 2018 Jun; 17(3): e12749. Published online 2018 Mar 25. doi: 10.1111/acel.12749

PMCID:: PMC5946063

Abstract Article PDF–1.6M

Select item 576535914.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566188515.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560192016.

P-body proteins regulate transcriptional rewiring to promote DNA replication stress resistance

Raphael Loll-Krippleber, Grant W. Brown

Nat Commun. 2017; 8: 558. Published online 2017 Sep 15. doi: 10.1038/s41467-017-00632-2

PMCID:: PMC5601920

Abstract Article PDF–3.8M

Select item 560025417.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 559294518.

A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis

Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark

G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089

PMCID:: PMC5592945

Abstract Article PDF–1.7M

Select item 541502119.

Deubiquitinating enzymes Ubp2 and Ubp15 regulate endocytosis by limiting ubiquitination and degradation of ARTs

Hsuan-Chung Ho, Jason A. MacGurn, Scott D. Emr

Mol Biol Cell. 2017 May 1; 28(9): 1271–1283. doi: 10.1091/mbc.E17-01-0008

PMCID:: PMC5415021

Abstract Article PDF–3.1M

Select item 512730920.

Engineering dynamical control of cell fate switching using synthetic phospho-regulons

Russell M. Gordley, Reid E. Williams, Caleb J. Bashor, Jared E. Toettcher, Shude Yan, Wendell A. Lim

Proc Natl Acad Sci U S A. 2016 Nov 22; 113(47): 13528–13533. Published online 2016 Nov 7. doi: 10.1073/pnas.1610973113

PMCID:: PMC5127309

Abstract Article PDF–1.0M

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