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Items: 1 to 20 of 21

1.
Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development
Belinda R. Hauser, Marit H. Aure, Michael C. Kelly, Genomics and Computational Biology Core, Matthew P. Hoffman, Alejandro M. Chibly
iScience. 2020 Dec 18; 23(12): 101838. Published online 2020 Nov 20. doi: 10.1016/j.isci.2020.101838
PMCID:
PMC7718488
AbstractArticlePDF–37M
2.
Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach
Surangi N. Perera, Ruth M. Williams, Rachel Lyne, Oliver Stubbs, Dennis P. Buehler, Tatjana Sauka-Spengler, Masaharu Noda, Gos Micklem, E. Michelle Southard-Smith, Clare V. H. Baker
Glia. Author manuscript; available in PMC 2020 Dec 1.
Published in final edited form as: Glia. 2020 Dec 1; 68(12): 2550–2584. Published online 2020 Aug 28. doi: 10.1002/glia.23870
PMCID:
PMC7116175
AbstractArticlePDF–8.9M
3.
Myc cooperates with β-catenin to drive gene expression in nephron progenitor cells
Xinchao Pan, Courtney M. Karner, Thomas J. Carroll
Development. 2017 Nov 15; 144(22): 4173–4182. doi: 10.1242/dev.153700
PMCID:
PMC5719246
AbstractArticle
4.
NKD2, a negative regulator of Wnt signaling, suppresses tumor growth and metastasis in osteosarcoma
S Zhao, L Kurenbekova, Y Gao, A Roos, CJ Creighton, P Rao, J Hicks, T-K Man, C Lau, AMC Brown, SN Jones, AJ Lazar, D Ingram, D Lev, LA Donehower, JT Yustein
Oncogene. Author manuscript; available in PMC 2016 Mar 22.
Published in final edited form as: Oncogene. 2015 Sep 24; 34(39): 5069–5079. Published online 2015 Jan 12. doi: 10.1038/onc.2014.429
PMCID:
PMC4802362
AbstractArticlePDF–907K
5.
DAAM1 and DAAM2 are co-required for myocardial maturation and sarcomere assembly
Rieko Ajima, Joseph A Bisson, Jay-Christian Helt, Masa-Aki Nakaya, Raymond Habas, Lino Tessarollo, Xi He, Edward E Morrisey, Terry P. Yamaguchi, Ethan David Cohen
Dev Biol. Author manuscript; available in PMC 2016 Dec 1.
Published in final edited form as: Dev Biol. 2015 Dec 1; 408(1): 126–139. Published online 2015 Oct 23. doi: 10.1016/j.ydbio.2015.10.003
PMCID:
PMC4765503
AbstractArticlePDF–4.4M
6.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
7.
Wdpcp, a PCP Protein Required for Ciliogenesis, Regulates Directional Cell Migration and Cell Polarity by Direct Modulation of the Actin Cytoskeleton
Cheng Cui, Bishwanath Chatterjee, Thomas P. Lozito, Zhen Zhang, Richard J. Francis, Hisato Yagi, Lisa M. Swanhart, Subramaniam Sanker, Deanne Francis, Qing Yu, Jovenal T. San Agustin, Chandrakala Puligilla, Tania Chatterjee, Terry Tansey, Xiaoqin Liu, Matthew W. Kelley, Elias T. Spiliotis, Adam V. Kwiatkowski, Rocky Tuan, Gregory J. Pazour, Neil A. Hukriede, Cecilia W. Lo
PLoS Biol. 2013 Nov; 11(11): e1001720. Published online 2013 Nov 26. doi: 10.1371/journal.pbio.1001720
PMCID:
PMC3841097
AbstractArticlePDF–7.4M
8.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
9.
Tbx2 and Tbx3 induce atrioventricular myocardial development and endocardial cushion formation
Reena Singh, Willem M. Hoogaars, Phil Barnett, Thomas Grieskamp, M. Sameer Rana, Henk Buermans, Henner F. Farin, Marianne Petry, Todd Heallen, James F. Martin, Antoon F. M. Moorman, Peter A. C. ‘t Hoen, Andreas Kispert, Vincent M. Christoffels
Cell Mol Life Sci. 2012 Apr; 69(8): 1377–1389. Published online 2011 Dec 1. doi: 10.1007/s00018-011-0884-2
PMCID:
PMC3314179
AbstractArticlePDF–3.2M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58
Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara
Dev Cell. Author manuscript; available in PMC 2011 Jun 7.
Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011
PMCID:
PMC3110151
AbstractArticlePDF–2.0M
12.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
13.
An atlas of combinatorial transcriptional regulation in mouse and man
The FANTOM consortium and RIKEN Omics Science Center
Cell. Author manuscript; available in PMC 2011 Mar 5.
Published in final edited form as: Cell. 2010 Mar 5; 140(5): 744–752. doi: 10.1016/j.cell.2010.01.044
Correction in:
volume 141 on page 369
PMCID:
PMC2836267
AbstractArticlePDF–2.2M
14.
Differentially expressed genes in embryonic cardiac tissues of mice lacking Folr1 gene activity
Huiping Zhu, Robert M Cabrera, Bogdan J Wlodarczyk, Daniel Bozinov, Deli Wang, Robert J Schwartz, Richard H Finnell
BMC Dev Biol. 2007; 7: 128. Published online 2007 Nov 20. doi: 10.1186/1471-213X-7-128
PMCID:
PMC2206038
AbstractArticlePDF–895K
15.
Viable Mice with Compound Mutations in the Wnt/Dvl Pathway Antagonists nkd1 and nkd2
Shu Zhang, Tolga Çagatay, Manami Amanai, Mei Zhang, Janine Kline, Diego H. Castrillon, Raheela Ashfaq, Orhan K. Öz, Keith A. Wharton, Jr.
Mol Cell Biol. 2007 Jun; 27(12): 4454–4464. Published online 2007 Apr 16. doi: 10.1128/MCB.00133-07
PMCID:
PMC1900041
AbstractArticlePDF–874K
16.
Identification of Oscillatory Genes in Somitogenesis from Functional Genomic Analysis of a Human Mesenchymal Stem Cell Model
Dilusha A. William, Biagio Saitta, Joshua D. Gibson, Jeremy Traas, Vladimir Markov, Dorian M. Gonzalez, William Sewell, Douglas M. Anderson, Stephen C. Pratt, Eric F. Rappaport, Kenro Kusumi
Dev Biol. Author manuscript; available in PMC 2007 Jun 25.
Published in final edited form as: Dev Biol. 2007 May 1; 305(1): 172–186. Published online 2007 Feb 14. doi: 10.1016/j.ydbio.2007.02.007
PMCID:
PMC1899184
AbstractArticlePDF–4.8M
17.
BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System
Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran
PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086
PMCID:
PMC1413568
ArticlePDF–99K
18.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
19.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
20.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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