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Select item 100106871.

A transcriptional constraint mechanism limits the homeostatic response to activity deprivation in mammalian neocortex

Vera Valakh, Derek Wise, Xiaoyue Aelita Zhu, Mingqi Sha, Jaidyn Fok, Stephen D Van Hooser, Robin Schectman, Isabel Cepeda, Ryan Kirk, Sean M O'Toole, Sacha B Nelson

eLife. 2023; 12: e74899. Published online 2023 Feb 7. doi: 10.7554/eLife.74899

PMCID:: PMC10010687

Abstract Article PDF–2.0M

Select item 94937262.

Hepatic leukemia factor-expressing paraxial mesoderm cells contribute to the developing brain vasculature

Yuta Koui, Takako Ideue, Michael Boylan, Matthew J. Anderson, Motomi Osato, Toshio Suda, Tomomasa Yokomizo, Yoh-suke Mukouyama

Biol Open. 2022 Sep 15; 11(9): bio059510. Published online 2022 Sep 15. doi: 10.1242/bio.059510

PMCID:: PMC9493726

Abstract Article PDF–11M

Select item 93460003.

Bone marrow imaging reveals the migration dynamics of neonatal hematopoietic stem cells

Yuji Takihara, Takumi Higaki, Tomomasa Yokomizo, Terumasa Umemoto, Kazunori Ariyoshi, Michihiro Hashimoto, Maiko Sezaki, Hitoshi Takizawa, Toshihiro Inoue, Toshio Suda, Hidenobu Mizuno

Commun Biol. 2022; 5: 776. Published online 2022 Aug 2. doi: 10.1038/s42003-022-03733-x

PMCID:: PMC9346000

Abstract Article PDF–3.7M

Select item 93432534.

Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex

Wen Yuan, Sai Ma, Juliana R. Brown, Kwanho Kim, Vanessa Murek, Lucia Trastulla, Alexander Meissner, Simona Lodato, Ashwin S. Shetty, Joshua Z. Levin, Jason D. Buenrostro, Michael J. Ziller, Paola Arlotta

Nat Neurosci. 2022; 25(8): 1049–1058. Published online 2022 Aug 1. doi: 10.1038/s41593-022-01123-4

PMCID:: PMC9343253

Abstract Article PDF–17M

Select item 84737845.

Hlf Expression Marks Early Emergence of Hematopoietic Stem Cell Precursors With Adult Repopulating Potential and Fate

Wanbo Tang, Jian He, Tao Huang, Zhijie Bai, Chaojie Wang, Haizhen Wang, Ruichuang Yang, Yanli Ni, Jun Hou, Junliang Wang, Jie Zhou, Yingpeng Yao, Yandong Gong, Siyuan Hou, Bing Liu, Yu Lan

Front Cell Dev Biol. 2021; 9: 728057. Published online 2021 Sep 13. doi: 10.3389/fcell.2021.728057

PMCID:: PMC8473784

Abstract Article PDF–5.8M

Select item 79387706.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 78263357.

Systematic analysis of differential rhythmic liver gene expression mediated by the circadian clock and feeding rhythms

Benjamin D. Weger, Cédric Gobet, Fabrice P. A. David, Florian Atger, Eva Martin, Nicholas E. Phillips, Aline Charpagne, Meltem Weger, Felix Naef, Frédéric Gachon

Proc Natl Acad Sci U S A. 2021 Jan 19; 118(3): e2015803118. Published online 2021 Jan 15. doi: 10.1073/pnas.2015803118

PMCID:: PMC7826335

Abstract Article PDF–5.8M

Select item 77365358.

Neuronal Activity Regulates Blood-Brain Barrier Efflux Transport through Endothelial Circadian Genes

Robert S. Pulido, Roeben N. Munji, Tamara C. Chan, Clare R. Quirk, Geoffrey A. Weiner, Benjamin D. Weger, Meghan J. Rossi, Sara Elmsaouri, Mario Malfavon, Aaron Deng, Caterina P. Profaci, Marie Blanchette, Tongcheng Qian, Koji L. Foreman, Eric V. Shusta, Michael R. Gorman, Frédéric Gachon, Stefan Leutgeb, Richard Daneman

Neuron. Author manuscript; available in PMC 2021 Dec 9.

Published in final edited form as: Neuron. 2020 Dec 9; 108(5): 937–952.e7. Published online 2020 Sep 25. doi: 10.1016/j.neuron.2020.09.002

PMCID:: PMC7736535

Abstract Article PDF–2.4M

Select item 70487779.

Aberrant expression of PAR bZIP transcription factors is associated with epileptogenesis, focus on hepatic leukemia factor

Lukas Rambousek, Tilo Gschwind, Carlos Lafourcade, Jean-Charles Paterna, Linda Dib, Jean-Marc Fritschy, Adriano Fontana

Sci Rep. 2020; 10: 3760. Published online 2020 Feb 28. doi: 10.1038/s41598-020-60638-7

PMCID:: PMC7048777

Abstract Article PDF–3.6M

Select item 660575110.

Hlf marks the developmental pathway for hematopoietic stem cells but not for erythro-myeloid progenitors

Tomomasa Yokomizo, Naoki Watanabe, Terumasa Umemoto, Junichi Matsuo, Ryota Harai, Yoshihiko Kihara, Eri Nakamura, Norihiro Tada, Tomohiko Sato, Tomoiku Takaku, Akihiko Shimono, Hitoshi Takizawa, Naomi Nakagata, Seiichi Mori, Mineo Kurokawa, Daniel G. Tenen, Motomi Osato, Toshio Suda, Norio Komatsu

J Exp Med. 2019 Jul 1; 216(7): 1599–1614. Published online 2019 May 10. doi: 10.1084/jem.20181399

PMCID:: PMC6605751

Abstract Article PDF–3.7M

Select item 638138811.

Transcription and Signaling Regulators in Developing Neuronal Subtypes of Mouse and Human Enteric Nervous System

Fatima Memic, Viktoria Knoflach, Khomgrit Morarach, Rebecca Sadler, Catia Laranjeira, Jens Hjerling-Leffler, Erik Sundström, Vassilis Pachnis, Ulrika Marklund

Gastroenterology. 2018 Feb; 154(3): 624–636. doi: 10.1053/j.gastro.2017.10.005

PMCID:: PMC6381388

Abstract Article

Select item 623331812.

Loss of CLOCK Results in Dysfunction of Brain Circuits Underlying Focal Epilepsy

Peijun Li, Xiaoqin Fu, Nathan A. Smith, Julie Ziobro, Julian Curiel, Milagros J. Tenga, Brandon Martin, Samuel Freedman, Christian A. Cea-Del Rio, Livio Oboti, Tammy N. Tsuchida, Chima Oluigbo, Amanda Yaun, Suresh N. Magge, Brent O’Neill, Amy Kao, Tesfaye G. Zelleke, Dewi T. Depositario-Cabacar, Svetlana Ghimbovschi, Susan Knoblach, Chen-Ying Ho, Joshua G. Corbin, Howard P. Goodkin, Stefano Vicini, Molly M. Huntsman, William D. Gaillard, Gregorio Valdez, Judy S. Liu

Neuron. Author manuscript; available in PMC 2018 Nov 13.

Published in final edited form as: Neuron. 2017 Oct 11; 96(2): 387–401.e6. doi: 10.1016/j.neuron.2017.09.044

PMCID:: PMC6233318

Abstract Article PDF–2.7M

Select item 501792113.

Parallel Pbx-Dependent Pathways Govern the Coalescence and Fate of Motor Columns

Olivia Hanley, Rediet Zewdu, Lisa J. Cohen, Heekyung Jung, Julie Lacombe, Polyxeni Philippidou, David H. Lee, Licia Selleri, Jeremy S. Dasen

Neuron. Author manuscript; available in PMC 2017 Sep 7.

Published in final edited form as: Neuron. 2016 Sep 7; 91(5): 1005–1020. Published online 2016 Aug 25. doi: 10.1016/j.neuron.2016.07.043

PMCID:: PMC5017921

Abstract Article PDF–3.5M

Select item 469807514.

Hlf is a genetic modifier of epilepsy caused by voltage-gated sodium channel mutations

Nicole A. Hawkins, Jennifer A. Kearney

Epilepsy Res. Author manuscript; available in PMC 2017 Jan 1.

Published in final edited form as: Epilepsy Res. 2016 Jan; 119: 20–23. Published online 2015 Dec 1. doi: 10.1016/j.eplepsyres.2015.11.016

PMCID:: PMC4698075

Abstract Article PDF–367K

Select item 465458115.

Conditional Expression of E2A-HLF Induces B-Cell Precursor Death and Myeloproliferative-Like Disease in Knock-In Mice

Jesús Duque-Afonso, Kevin S. Smith, Michael L. Cleary

PLoS One. 2015; 10(11): e0143216. Published online 2015 Nov 20. doi: 10.1371/journal.pone.0143216

PMCID:: PMC4654581

Abstract Article PDF–3.6M

Select item 456239116.

Chronic Alcohol Exposure and the Circadian Clock Mutation Exert Tissue-Specific Effects on Gene Expression in Mouse Hippocampus, Liver and Proximal Colon

Keith C. Summa, Peng Jiang, Karrie Fitzpatrick, Robin M. Voigt, Samuel J. Bowers, Christopher B. Forsyth, Martha Hotz Vitaterna, Ali Keshavarzian, Fred W. Turek

Alcohol Clin Exp Res. Author manuscript; available in PMC 2016 Oct 1.

Published in final edited form as: Alcohol Clin Exp Res. 2015 Oct; 39(10): 1917–1929. Published online 2015 Sep 2. doi: 10.1111/acer.12834

PMCID:: PMC4562391

Abstract Article PDF–927K

Select item 440029117.

MEIS1 regulates an HLF–oxidative stress axis in MLL-fusion gene leukemia

Jayeeta Roychoudhury, Jason P. Clark, Gabriel Gracia-Maldonado, Zeenath Unnisa, Mark Wunderlich, Kevin A. Link, Nupur Dasgupta, Bruce Aronow, Gang Huang, James C. Mulloy, Ashish R. Kumar

Blood. 2015 Apr 16; 125(16): 2544–2552. Prepublished online 2015 Mar 4. doi: 10.1182/blood-2014-09-599258

PMCID:: PMC4400291

Abstract Article

Select item 431955918.

A high resolution spatiotemporal atlas of gene expression of the developing mouse brain

Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones

Neuron. Author manuscript; available in PMC 2015 Jul 16.

Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033

PMCID:: PMC4319559

Abstract Article PDF–3.0M

Select item 357241019.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 317805920.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

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