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Items: 1 to 20 of 79

1.
Systematic analysis of YFP traps reveals common mRNA/protein discordance in neural tissues
Joshua S. Titlow, Maria Kiourlappou, Ana Palanca, Jeffrey Y. Lee, Dalia S. Gala, Darragh Ennis, Joyce J.S. Yu, Florence L. Young, David Miguel Susano Pinto, Sam Garforth, Helena S. Francis, Finn Strivens, Hugh Mulvey, Alex Dallman-Porter, Staci Thornton, Diana Arman, Marissa J. Millard, Aino I. Järvelin, Mary Kay Thompson, Martin Sargent, Ilias Kounatidis, Richard M. Parton, Stephen Taylor, Ilan Davis
J Cell Biol. 2023 Jun 5; 222(6): e202205129. Published online 2023 May 5. doi: 10.1083/jcb.202205129
PMCID:
PMC10165541
AbstractArticlePDF–8.4M
2.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
3.
Cytological heterogeneity of heterochromatin among 10 sequenced Drosophila species
Marcella Marchetti, Lucia Piacentini, Maria Francesca Berloco, Assunta Maria Casale, Ugo Cappucci, Sergio Pimpinelli, Laura Fanti
Genetics. 2022 Oct; 222(2): iyac119. Published online 2022 Aug 10. doi: 10.1093/genetics/iyac119
PMCID:
PMC9526073
AbstractArticlePDF–1.6M
4.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
5.
Molecular and genetic dissection of recursive splicing
Brian Joseph, Chaz Scala, Shu Kondo, Eric C Lai
Life Sci Alliance. 2022 Jan; 5(1): e202101063. Published online 2021 Nov 10. doi: 10.26508/lsa.202101063
PMCID:
PMC8605326
AbstractArticlePDF–2.6M
6.
Comprehensive Identification and Alternative Splicing of Microexons in Drosophila
Ting-Lin Pang, Zhan Ding, Shao-Bo Liang, Liang Li, Bei Zhang, Yu Zhang, Yu-Jie Fan, Yong-Zhen Xu
Front Genet. 2021; 12: 642602. Published online 2021 Mar 30. doi: 10.3389/fgene.2021.642602
PMCID:
PMC8042270
AbstractArticlePDF–3.6M
7.
The Making of Long-Lasting Memories: A Fruit Fly Perspective
Camilla Roselli, Mani Ramaswami, Tamara Boto, Isaac Cervantes-Sandoval
Front Behav Neurosci. 2021; 15: 662129. Published online 2021 Mar 30. doi: 10.3389/fnbeh.2021.662129
PMCID:
PMC8042140
AbstractArticlePDF–1.4M
8.
Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila
Colleen N McLaughlin, Maria Brbić, Qijing Xie, Tongchao Li, Felix Horns, Sai Saroja Kolluru, Justus M Kebschull, David Vacek, Anthony Xie, Jiefu Li, Robert C Jones, Jure Leskovec, Stephen R Quake, Liqun Luo, Hongjie Li
eLife. 2021; 10: e63856. Published online 2021 Feb 8. doi: 10.7554/eLife.63856
PMCID:
PMC7870146
AbstractArticlePDF–11M
9.
Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons
Qijing Xie, Maria Brbic, Felix Horns, Sai Saroja Kolluru, Robert C Jones, Jiefu Li, Anay R Reddy, Anthony Xie, Sayeh Kohani, Zhuoran Li, Colleen N McLaughlin, Tongchao Li, Chuanyun Xu, David Vacek, David J Luginbuhl, Jure Leskovec, Stephen R Quake, Liqun Luo, Hongjie Li
eLife. 2021; 10: e63450. Published online 2021 Jan 11. doi: 10.7554/eLife.63450
PMCID:
PMC7870145
AbstractArticlePDF–13M
10.
Identification of novel regulators of dendrite arborization using cell type-specific RNA metabolic labeling
Mohamed Y. Aboukilila, Josephine D. Sami, Jingtian Wang, Whitney England, Robert C. Spitale, Michael D. Cleary
PLoS One. 2020; 15(12): e0240386. Published online 2020 Dec 2. doi: 10.1371/journal.pone.0240386
PMCID:
PMC7710095
AbstractArticlePDF–1.6M
11.
Zinc Finger RNA-Binding Protein Zn72D Regulates ADAR-Mediated RNA Editing in Neurons
Anne L. Sapiro, Emily C. Freund, Lucas Restrepo, Huan-Huan Qiao, Amruta Bhate, Qin Li, Jian-Quan Ni, Timothy J. Mosca, Jin Billy Li
Cell Rep. Author manuscript; available in PMC 2020 Jun 21.
Published in final edited form as: Cell Rep. 2020 May 19; 31(7): 107654. doi: 10.1016/j.celrep.2020.107654
PMCID:
PMC7306179
AbstractArticlePDF–2.1M
12.
Imp/IGF2BP levels modulate individual neural stem cell growth and division through myc mRNA stability
Tamsin J Samuels, Aino I Järvelin, David Ish-Horowicz, Ilan Davis
eLife. 2020; 9: e51529. Published online 2020 Jan 14. doi: 10.7554/eLife.51529
PMCID:
PMC7025822
AbstractArticlePDF–3.4M
13.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
14.
Interspecies analysis of MYC targets identifies tRNA synthetases as mediators of growth and survival in MYC-overexpressing cells
Jonathan Zirin, Xiaochun Ni, Laura M. Sack, Donghui Yang-Zhou, Yanhui Hu, Roderick Brathwaite, Martha L. Bulyk, Stephen J. Elledge, Norbert Perrimon
Proc Natl Acad Sci U S A. 2019 Jul 16; 116(29): 14614–14619. Published online 2019 Jul 1. doi: 10.1073/pnas.1821863116
Correction in:
Proc Natl Acad Sci U S A. 2019 Aug 20; 116(34): 17128.
PMCID:
PMC6642371
AbstractArticlePDF–1.5M
15.
Satellite DNA-containing gigantic introns in a unique gene expression program during Drosophila spermatogenesis
Jaclyn M. Fingerhut, Jessica V. Moran, Yukiko M. Yamashita
PLoS Genet. 2019 May; 15(5): e1008028. Published online 2019 May 9. doi: 10.1371/journal.pgen.1008028
PMCID:
PMC6508621
AbstractArticlePDF–5.0M
16.
A length-dependent evolutionarily conserved pathway controls nuclear export of circular RNAs
Chuan Huang, Dongming Liang, Deirdre C. Tatomer, Jeremy E. Wilusz
Genes Dev. 2018 May 1; 32(9-10): 639–644. doi: 10.1101/gad.314856.118
PMCID:
PMC6004072
AbstractArticlePDF–678K
17.
Direct measurement of pervasive weak repression by microRNAs and their role at the network level
Fuqiang Ma, Pei Lin, Qingjian Chen, Xuemei Lu, Yong E. Zhang, Chung-I Wu
BMC Genomics. 2018; 19: 362. Published online 2018 May 15. doi: 10.1186/s12864-018-4757-z
PMCID:
PMC5952853
AbstractArticlePDF–1.3M
18.
The output of protein-coding genes shifts to circular RNAs when the pre-mRNA processing machinery is limiting
Dongming Liang, Deirdre C. Tatomer, Zheng Luo, Huang Wu, Li Yang, Ling-Ling Chen, Sara Cherry, Jeremy E. Wilusz
Mol Cell. Author manuscript; available in PMC 2018 Dec 7.
Published in final edited form as: Mol Cell. 2017 Dec 7; 68(5): 940–954.e3. Published online 2017 Nov 22. doi: 10.1016/j.molcel.2017.10.034
PMCID:
PMC5728686
AbstractArticlePDF–3.1M
19.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
20.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M

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