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Select item 111163891.

Gut microbial metabolite targets HDAC3-FOXK1-interferon axis in fibroblast-like synoviocytes to ameliorate rheumatoid arthritis

Hongzhen Chen, Xuekun Fu, Xiaohao Wu, Junyi Zhao, Fang Qiu, Zhenghong Wang, Zhuqian Wang, Xinxin Chen, Duoli Xie, Jie Huang, Junyu Fan, Xu Yang, Yi Song, Jie Li, Dongyi He, Guozhi Xiao, Aiping Lu, Chao Liang

Bone Res. 2024; 12: 31. Published online 2024 May 23. doi: 10.1038/s41413-024-00336-6

PMCID:: PMC11116389

Abstract Article PDF–4.0M

Select item 103257002.

FOXK1 regulates Wnt signalling to promote cardiogenesis

Javier E Sierra-Pagan, Nikita Dsouza, Satyabrata Das, Thijs A Larson, Jacob R Sorensen, Xiao Ma, Patricia Stan, Erik J Wanberg, Xiaozhong Shi, Mary G Garry, Wuming Gong, Daniel J Garry

Cardiovasc Res. 2023 Jun; 119(8): 1728–1739. Published online 2023 Apr 10. doi: 10.1093/cvr/cvad054

PMCID:: PMC10325700

Abstract Article PDF–6.1M

Select item 93927993.

USP10 deubiquitinates Tau, mediating its aggregation

Zhen Wei, Kuan Zeng, Jichang Hu, Xing Li, Fang Huang, Bin Zhang, Jian-Zhi Wang, Rong Liu, Hong-Lian Li, Xiaochuan Wang

Cell Death Dis. 2022 Aug; 13(8): 726. Published online 2022 Aug 20. doi: 10.1038/s41419-022-05170-4

PMCID:: PMC9392799

Abstract Article PDF–4.7M

Select item 79387704.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 66100195.

Identification of Insulin-Responsive Transcription Factors That Regulate Glucose Production by Hepatocytes

Liheng Wang, Qiongming Liu, Takumi Kitamoto, Junjie Hou, Jun Qin, Domenico Accili

Diabetes. 2019 Jun; 68(6): 1156–1167. Published online 2019 Apr 1. doi: 10.2337/db18-1236

PMCID:: PMC6610019

Abstract Article PDF–2.0M

Select item 65910256.

mTORC1 promotes metabolic reprogramming by suppression of GSK3-dependent Foxk1 phosphorylation

Long He, Ana P. Gomes, Xin Wang, Sang Oh Yoon, Gina Lee, Michal Nagiec, Sungyun Cho, Andre Chavez, Tasnia Islam, Yonghao Yu, John M. Asara, Bo Yeon Kim, John Blenis

Mol Cell. Author manuscript; available in PMC 2019 Jun 24.

Published in final edited form as: Mol Cell. 2018 Jun 7; 70(5): 949–960.e4. Published online 2018 May 31. doi: 10.1016/j.molcel.2018.04.024

PMCID:: PMC6591025

Abstract Article PDF–1.1M

Select item 64509067.

FoxK1 and FoxK2 in insulin regulation of cellular and mitochondrial metabolism

Masaji Sakaguchi, Weikang Cai, Chih-Hao Wang, Carly T. Cederquist, Marcos Damasio, Erica P. Homan, Thiago Batista, Alfred K. Ramirez, Manoj K. Gupta, Martin Steger, Nicolai J. Wewer Albrechtsen, Shailendra Kumar Singh, Eiichi Araki, Matthias Mann, Sven Enerbäck, C. Ronald Kahn

Nat Commun. 2019; 10: 1582. Published online 2019 Apr 5. doi: 10.1038/s41467-019-09418-0

PMCID:: PMC6450906

Abstract Article PDF–4.2M

Select item 62441838.

Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells

Sunyuan Zhang, Nicholas A. Williamson, Marie A. Bogoyevitch

Sci Data. 2018; 5: 180262. Published online 2018 Nov 20. doi: 10.1038/sdata.2018.262

PMCID:: PMC6244183

Abstract Article PDF–753K

Select item 52010029.

Loss of the tumor suppressor BAP1 causes myeloid transformation

Anwesha Dey, Dhaya Seshasayee, Rajkumar Noubade, Dorothy M. French, Jinfeng Liu, Mira S. Chaurushiya, Donald S. Kirkpatrick, Victoria C. Pham, Jennie R. Lill, Corey E. Bakalarski, Jiansheng Wu, Lilian Phu, Paula Katavolos, Lindsay M. Saunders, Omar Abdel-Wahab, Zora Modrusan, Somasekar Seshagiri, Ken Dong, Zhonghua Lin, Mercedesz Balazs, Rowena Suriben, Kim Newton, Sarah Hymowitz, Guillermo Garcia-Manero, Flavius Martin, Ross L. Levine, Vishva M. Dixit

Science. Author manuscript; available in PMC 2016 Dec 30.

Published in final edited form as: Science. 2012 Sep 21; 337(6101): 1541–1546. Published online 2012 Aug 9. doi: 10.1126/science.1221711

PMCID:: PMC5201002

Abstract Article PDF–1.7M

Select item 449466210.

Foxk1 recruits the Sds3 complex and represses gene expression in myogenic progenitors

Xiaozhong Shi, David C. Seldin, Daniel J. Garry

Biochem J. Author manuscript; available in PMC 2015 Jul 7.

Published in final edited form as: Biochem J. 2012 Sep 15; 446(3): 349–357. doi: 10.1042/BJ20120563

PMCID:: PMC4494662

Abstract Article PDF–1.1M

Select item 449465111.

Sin3 interacts with Foxk1 and regulates myogenic progenitors

Xiaozhong Shi, Daniel J. Garry

Mol Cell Biochem. Author manuscript; available in PMC 2015 Jul 7.

Published in final edited form as: Mol Cell Biochem. 2012 Jul; 366(0): 251–258. Published online 2012 Apr 4. doi: 10.1007/s11010-012-1302-2

PMCID:: PMC4494651

Abstract Article PDF–923K

Select item 431955912.

A high resolution spatiotemporal atlas of gene expression of the developing mouse brain

Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones

Neuron. Author manuscript; available in PMC 2015 Jul 16.

Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033

PMCID:: PMC4319559

Abstract Article PDF–3.0M

Select item 425042213.

Foxk proteins repress the initiation of starvation-induced atrophy and autophagy programs

Christopher John Bowman, Donald E. Ayer, Brian David Dynlacht

Nat Cell Biol. Author manuscript; available in PMC 2015 Jun 1.

Published in final edited form as: Nat Cell Biol. 2014 Dec; 16(12): 1202–1214. Published online 2014 Nov 17. doi: 10.1038/ncb3062

PMCID:: PMC4250422

Abstract Article PDF–2.9M

Select item 356185514.

Foxk1 promotes cell proliferation and represses myogenic differentiation by regulating Foxo4 and Mef2

Xiaozhong Shi, Alicia M. Wallis, Robert D. Gerard, Kevin A. Voelker, Robert W. Grange, Ronald A. DePinho, Mary G. Garry, Daniel J. Garry

J Cell Sci. 2012 Nov 15; 125(22): 5329–5337. doi: 10.1242/jcs.105239

PMCID:: PMC3561855

Abstract Article

Select item 343984515.

A Genome-Wide Screen to Identify Transcription Factors Expressed in Pelvic Ganglia of the Lower Urinary Tract

Carrie B. Wiese, Sara Ireland, Nicole L. Fleming, Jing Yu, M. Todd Valerius, Kylie Georgas, Han Sheng Chiu, Jane Brennan, Jane Armstrong, Melissa H. Little, Andrew P. McMahon, E. Michelle Southard-Smith

Front Neurosci. 2012; 6: 130. Published online 2012 Sep 12. doi: 10.3389/fnins.2012.00130

PMCID:: PMC3439845

Abstract Article PDF–1.4M

Select item 317805916.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 311015117.

A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58

Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara

Dev Cell. Author manuscript; available in PMC 2011 Jun 7.

Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011

PMCID:: PMC3110151

Abstract Article PDF–2.0M

Select item 302253418.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 277551819.

A Genome-Wide Screen for Spatially Restricted Expression Patterns Identifies Transcription Factors That Regulate Glial Development

Hui Fu, Jun Cai, Hans Clevers, Eva Fast, Susan Gray, Rachel Greenberg, Mukesh K. Jain, Qiufu Ma, Mengsheng Qiu, David H. Rowitch, Christopher M. Taylor, Charles D. Stiles

J Neurosci. 2009 Sep 9; 29(36): 11399–11408. doi: 10.1523/JNEUROSCI.0160-09.2009

PMCID:: PMC2775518

Abstract Article PDF–2.5M

Select item 255627020.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

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